Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 7.0e-240 833.6 425 100.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.9e-177 625.5 340 95.0
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 8.4e-169 597.4 342 93.0
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.6e-141 506.1 346 75.4
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 5.0e-137 491.9 346 71.7
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 8.8e-134 481.1 322 74.2
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 3.3e-133 479.2 334 73.4
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 2.6e-130 469.5 335 70.7
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 3.8e-129 465.7 334 71.9
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 1.9e-128 463.4 335 69.9
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 5.5e-128 461.8 335 70.4
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 4.7e-127 458.8 335 67.8
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 6.1e-127 458.4 330 70.9
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 1.4e-126 457.2 338 68.0
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 4.0e-126 455.7 331 70.1
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 5.2e-126 455.3 331 70.1
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 8.8e-126 454.5 332 69.0
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 1.5e-125 453.8 337 68.8
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 1.5e-125 453.8 335 68.7
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 4.4e-125 452.2 333 70.9
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 7.5e-125 451.4 330 69.4
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 2.7e-122 443.0 318 70.4
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 7.7e-122 441.4 335 68.1
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 5.0e-121 438.7 323 69.3
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 5.0e-121 438.7 335 67.2
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 8.5e-121 438.0 327 68.5
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 9.4e-120 434.5 328 67.1
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 1.6e-119 433.7 313 71.2
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 4.7e-119 432.2 347 63.7
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 6.1e-119 431.8 328 68.3
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.4e-118 430.6 332 67.2
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.3e-118 429.9 334 68.6
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 5.2e-118 428.7 341 63.3
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.2e-117 427.6 329 66.3
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 2.0e-117 426.8 349 66.8
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 2.6e-117 426.4 327 66.7
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 7.5e-117 424.9 320 69.4
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 7.5e-117 424.9 308 70.8
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.8e-117 424.5 336 66.1
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 3.7e-116 422.5 353 65.4
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 3.7e-116 422.5 353 65.4
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 8.3e-116 421.4 335 64.5
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.1e-115 421.0 307 71.7
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.4e-115 420.6 338 67.5
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 2.7e-114 416.4 331 65.6
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.7e-114 416.4 327 65.4
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 4.5e-114 415.6 338 64.2
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 5.9e-114 415.2 331 65.3
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 5.9e-114 415.2 331 65.3
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 5.9e-114 415.2 326 66.3
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.0e-113 414.5 307 67.4
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.0e-113 414.5 330 63.9
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 2.3e-113 413.3 309 67.0
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.3e-113 413.3 337 64.1
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.3e-113 413.3 330 64.2
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.9e-113 412.9 325 66.2
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 1.1e-112 411.0 330 64.8
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 1.1e-112 411.0 330 64.8
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.5e-112 410.6 330 64.2
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.5e-112 409.8 333 64.3
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.5e-112 409.8 333 64.3
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.5e-112 409.8 333 64.3
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 5.5e-112 408.7 332 64.2
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 5.5e-112 408.7 316 64.9
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 7.2e-112 408.3 307 66.4
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.6e-111 407.1 323 64.1
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.8e-111 406.4 332 63.9
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 3.6e-111 406.0 306 66.0
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.7e-111 405.6 330 63.6
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 1.8e-110 403.7 331 65.0
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 3.0e-110 402.9 341 62.8
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 5.2e-110 402.1 320 64.4
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 4.4e-109 399.1 318 63.2
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 7.5e-109 398.3 330 65.5
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-108 397.5 337 62.3
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.4e-107 394.0 340 63.8
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.8e-107 393.7 340 63.5
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 3.1e-107 392.9 316 63.9
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 3.1e-107 392.9 332 62.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 3.1e-107 392.9 324 62.3
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 4.1e-107 392.5 321 63.2
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 7.0e-107 391.7 335 60.9
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.7e-106 389.8 324 61.1
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 5.9e-106 388.7 324 61.7
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 1.7e-105 387.1 280 69.3
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 5.0e-105 385.6 319 62.4
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 3.3e-104 382.9 329 60.2
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.6e-103 379.4 307 62.2
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 3.6e-103 379.4 316 62.0
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 6.8e-102 375.2 307 60.3
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.5e-101 374.0 329 58.4
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.4e-101 372.9 332 58.7
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 3.4e-101 372.9 332 58.7
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 7.5e-101 371.7 342 59.1
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 9.8e-101 371.3 333 62.2
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 3.7e-100 369.4 323 60.4
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 9.2e-99 364.8 274 66.8
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.2e-98 364.4 311 59.8
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.3e-97 360.1 324 59.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.1e-96 357.8 262 68.3
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 9.5e-96 354.8 322 57.8
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.7e-95 352.4 329 58.4
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 6.2e-95 352.1 327 56.3
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 8.0e-95 351.7 321 57.9
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 4.0e-94 349.4 314 60.8
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.4e-93 345.9 268 64.6
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.3e-92 344.4 322 55.9
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.7e-92 344.0 331 55.3
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.7e-92 344.0 256 67.6
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 4.9e-92 342.4 334 55.4
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.4e-91 340.9 324 56.5
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 7.0e-91 338.6 312 57.1
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 1.2e-90 337.8 320 56.9
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-90 337.8 328 54.9
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.1e-90 337.0 322 56.5
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.6e-90 335.9 308 57.1
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 7.8e-90 335.1 389 51.4
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.3e-89 334.3 308 56.8
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.7e-89 334.0 327 55.0
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 2.3e-89 333.6 316 57.0
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 2.5e-88 330.1 337 54.9
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 5.6e-88 328.9 331 53.8
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 6.8e-86 322.0 323 50.8
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.2e-85 321.2 340 51.8
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 4.4e-85 319.3 334 49.7
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 9.9e-85 318.2 319 53.9
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 3.7e-84 316.2 318 53.8
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 1.1e-83 314.7 318 53.1
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 2.7e-82 310.1 277 58.5
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.7e-82 310.1 331 51.4
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 2.3e-81 307.0 318 51.9
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 2.3e-81 307.0 318 51.9
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.0e-81 306.6 269 57.6
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.6e-81 305.4 306 52.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.5e-80 304.3 324 48.5
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.5e-80 303.5 326 47.5
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 7.3e-80 302.0 330 47.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.6e-79 300.8 272 57.4
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 4.7e-79 299.3 326 46.9
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 3.1e-78 296.6 310 48.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.5e-77 294.3 335 48.4
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.5e-77 294.3 326 46.0
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 9.9e-77 291.6 336 45.2
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.2e-76 290.4 321 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.7e-73 280.8 327 46.2
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.6e-71 273.1 180 73.3
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 9.9e-69 265.0 180 70.6
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.8e-68 263.1 216 62.5
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.8e-68 263.1 190 65.8
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.9e-67 260.8 173 72.3
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.0e-65 255.0 330 46.1
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.1e-62 243.4 185 64.9
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-61 241.5 180 62.2
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.3e-60 238.0 185 64.9
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 1.3e-60 238.0 214 57.0
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 7.9e-58 228.8 237 50.6
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.7e-57 225.3 180 61.1
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 4.5e-53 213.0 181 56.4
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 4.6e-50 203.0 330 37.3
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 1.5e-48 198.0 164 59.1
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 2.4e-46 190.7 216 53.2
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 2.0e-45 187.6 339 36.0
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 1.0e-36 158.7 161 55.9
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.7e-36 157.9 166 53.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 5.1e-33 146.4 167 47.3
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 5.3e-30 136.3 333 31.2
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.7e-28 131.3 89 67.4
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 8.5e-28 129.0 95 72.6
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-27 128.6 87 71.3
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 6.1e-26 122.9 95 64.2
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.0e-25 122.1 76 73.7
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.4e-22 110.9 81 58.0
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 7.0e-22 109.4 80 58.8
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.5e-21 108.2 76 73.7
FAN21G1425 Fragaria x ananassa HOM05D006208 ORTHO05D007606 2.4e-14 84.3 39 94.9
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 4.5e-13 80.1 74 60.8
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 5.9e-13 79.7 66 68.2
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.0e-12 79.0 48 75.0
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 8.5e-12 75.9 62 59.7
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 7.2e-11 72.8 81 54.3
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 1.8e-09 68.2 48 72.9
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.7e-07 60.5 78 44.9


User provided reference genes

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