Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0806 Fragaria x ananassa HOM05D005739 ORTHO05D007740 1.0e-218 763.1 382 100.0
FvH4_3g02490 Fragaria vesca HOM05D005739 ORTHO05D007740 4.1e-199 698.0 364 96.2
RcHm_v2.0_Chr5g0003721 Rosa chinensis HOM05D005739 ORTHO05D007740 1.7e-184 649.4 364 87.4
MD10G1317700 Malus domestica HOM05D005739 ORTHO05D007740 3.3e-164 582.0 362 79.3
Ciclev10015698m.g Citrus clementina HOM05D005739 ORTHO05D007740 7.6e-153 544.3 362 73.2
Atru.chr10.2176 Acer truncatum HOM05D005739 ORTHO05D007740 4.9e-152 541.6 361 72.6
Dinv13869 Davidia involucrata HOM05D005739 ORTHO05D007740 8.4e-152 540.8 362 71.5
Cfa000251 Carpinus fangiana HOM05D005739 ORTHO05D007740 1.4e-151 540.0 362 72.9
QL05p074082 Quercus lobata HOM05D005739 ORTHO05D007740 3.2e-151 538.9 361 72.0
Duzib235G0413 Durio zibethinus HOM05D005739 ORTHO05D007740 2.7e-150 535.8 359 71.9
TWI38G1065 Tripterygium wilfordii HOM05D005739 ORTHO05D007740 2.3e-149 532.7 362 71.0
COL.COLO4_31742 Corchorus olitorius HOM05D005739 ORTHO05D007740 3.9e-149 531.9 358 70.7
CSS0045804 Camellia sinensis var. sinensis HOM05D005739 ORTHO05D007740 1.9e-148 529.6 362 71.8
Potri.011G000100 Populus trichocarpa HOM05D005739 ORTHO05D007740 5.6e-148 528.1 362 70.2
GSVIVG01012654001 Vitis vinifera HOM05D005739 ORTHO05D007740 9.6e-148 527.3 358 70.1
EL10Ac8g20019 Beta vulgaris HOM05D005739 ORTHO05D007740 1.3e-147 526.9 361 71.2
TPR.G37091 Trifolium pratense HOM05D005739 ORTHO05D007740 2.8e-147 525.8 364 70.1
Ca_21095_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 3.7e-147 525.4 366 68.9
Ca_30203_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 3.7e-147 525.4 366 68.9
Gohir.D06G153000 Gossypium hirsutum HOM05D005739 ORTHO05D007740 4.8e-147 525.0 358 70.4
Glyma.07G258900 Glycine max HOM05D005739 ORTHO05D007740 1.1e-146 523.9 363 69.7
Thecc.06G217300 Theobroma cacao HOM05D005739 ORTHO05D007740 1.4e-146 523.5 357 71.4
Nn1g03584 Nelumbo nucifera HOM05D005739 ORTHO05D007740 1.8e-146 523.1 359 71.0
Psat4g007680 Pisum sativum HOM05D005739 ORTHO05D007740 3.1e-146 522.3 365 68.8
Gorai.010G179000 Gossypium raimondii HOM05D005739 ORTHO05D007740 4.0e-146 521.9 358 70.1
Hma1.2p1_0813F.1_g222580 Hydrangea macrophylla HOM05D005739 ORTHO05D007740 4.0e-146 521.9 369 69.4
VMungo1215G0361 Vigna mungo HOM05D005739 ORTHO05D007740 5.3e-146 521.5 363 70.5
arahy.Tifrunner.gnm1.ann1.GPHX1M Arachis hypogaea HOM05D005739 ORTHO05D007740 2.6e-145 519.2 364 69.8
Glyma.15G106200 Glycine max HOM05D005739 ORTHO05D007740 4.5e-145 518.5 357 70.3
Actinidia11847 Actinidia chinensis HOM05D005739 ORTHO05D007740 7.6e-145 517.7 378 67.7
Sabra11G0000600 Salix brachista HOM05D005739 ORTHO05D007740 7.6e-145 517.7 362 69.6
arahy.Tifrunner.gnm1.ann1.HAY2RB Arachis hypogaea HOM05D005739 ORTHO05D007740 1.0e-144 517.3 364 69.8
Phvul.003G077000 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 1.9e-143 513.1 364 69.2
CsaV3_6G049150 Cucumis sativus L. HOM05D005739 ORTHO05D007740 5.5e-143 511.5 354 70.3
MELO3C007380.2 Cucumis melo HOM05D005739 ORTHO05D007740 7.1e-143 511.1 354 70.6
TAR627G1089 Trochodendron aralioides HOM05D005739 ORTHO05D007740 2.7e-142 509.2 360 68.6
Glyma.13G206500 Glycine max HOM05D005739 ORTHO05D007740 1.0e-141 507.3 357 68.3
Rhsim02G0110500 Rhododendron simsii HOM05D005739 ORTHO05D007740 5.1e-141 505.0 379 66.8
VMungo0540G2038 Vigna mungo HOM05D005739 ORTHO05D007740 5.1e-141 505.0 356 69.4
PGSC0003DMG400011257 Solanum tuberosum HOM05D005739 ORTHO05D007740 6.7e-141 504.6 365 67.9
DCAR_008137 Daucus carota HOM05D005739 ORTHO05D007740 2.5e-140 502.7 366 66.7
Lsat_1_v5_gn_4_60101 Lactuca sativa HOM05D005739 ORTHO05D007740 2.5e-140 502.7 342 70.8
Lalb_Chr20g0118561 Lupinus albus HOM05D005739 ORTHO05D007740 2.5e-140 502.7 365 68.5
Sed0020639 Sechium edule HOM05D005739 ORTHO05D007740 2.5e-140 502.7 361 67.9
Haze_06773 Corylus avellana HOM05D005739 ORTHO05D007740 4.3e-140 501.9 328 75.6
Lj6g0027190 Lotus japonicus HOM05D005739 ORTHO05D007740 5.7e-140 501.5 364 67.9
HanXRQChr16g0515931 Helianthus annuus HOM05D005739 ORTHO05D007740 7.4e-140 501.1 357 67.8
PGR004G1404 Punica granatum HOM05D005739 ORTHO05D007740 9.6e-140 500.7 354 67.8
Peaxi162Scf00203g01110 Petunia axillaris HOM05D005739 ORTHO05D007740 1.6e-139 500.0 359 67.7
Phvul.006G151100 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 8.2e-139 497.7 356 68.8
Oeu063902.1 Olea europaea HOM05D005739 ORTHO05D007740 1.4e-138 496.9 361 66.8
PSO832G4144 Papaver somniferum HOM05D005739 ORTHO05D007740 1.4e-138 496.9 355 69.0
Solyc10g005310.3 Solanum lycopersicum HOM05D005739 ORTHO05D007740 1.8e-138 496.5 365 66.3
Cc09_g01940 Coffea canephora HOM05D005739 ORTHO05D007740 4.0e-138 495.4 355 68.5
MSTRG.15974 Avicennia marina HOM05D005739 ORTHO05D007740 6.9e-138 494.6 351 68.4
Cpa.g.sc198.24 Carica papaya HOM05D005739 ORTHO05D007740 1.2e-137 493.8 340 71.2
SalBow8G1417 Salvia bowleyana HOM05D005739 ORTHO05D007740 1.5e-137 493.4 364 66.8
ECA234G0122 Erigeron canadensis HOM05D005739 ORTHO05D007740 3.4e-137 492.3 359 66.3
ClCG01G022090 Citrullus lanatus HOM05D005739 ORTHO05D007740 2.2e-136 489.6 354 68.6
PSO210G3635 Papaver somniferum HOM05D005739 ORTHO05D007740 2.2e-136 489.6 355 68.2
vmacro15817 Vaccinium macrocarpon HOM05D005739 ORTHO05D007740 2.2e-136 489.6 379 65.4
CARHR252690 Cardamine hirsuta HOM05D005739 ORTHO05D007740 8.4e-136 487.6 356 65.2
Sed0022137 Sechium edule HOM05D005739 ORTHO05D007740 8.4e-136 487.6 355 67.3
A09p26050 Brassica napus HOM05D005739 ORTHO05D007740 1.4e-135 486.9 349 65.6
Nitab4.5_0007448g0040 Nicotiana tabacum HOM05D005739 ORTHO05D007740 1.9e-135 486.5 347 68.3
ATR0752G010 Amborella trichopoda HOM05D005739 ORTHO05D007740 2.5e-135 486.1 361 65.4
BraA09t38171Z Brassica rapa HOM05D005739 ORTHO05D007740 3.5e-134 482.3 349 65.0
Gohir.A06G147200 Gossypium hirsutum HOM05D005739 ORTHO05D007740 3.5e-134 482.3 334 69.5
Ca_00625_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 7.9e-134 481.1 362 66.6
Migut.M01296 Erythranthe guttata HOM05D005739 ORTHO05D007740 1.8e-133 479.9 354 66.9
Psat1g181440 Pisum sativum HOM05D005739 ORTHO05D007740 2.3e-133 479.6 361 65.7
AL6G48370 Arabidopsis lyrata HOM05D005739 ORTHO05D007740 3.0e-133 479.2 349 65.6
TPR.G7643 Trifolium pratense HOM05D005739 ORTHO05D007740 3.9e-133 478.8 361 65.4
BcaC04g21334 Brassica carinata HOM05D005739 ORTHO05D007740 5.1e-133 478.4 349 64.8
BolC9t56140H Brassica oleracea HOM05D005739 ORTHO05D007740 6.7e-133 478.0 349 64.8
Medtr2g022780 Medicago truncatula HOM05D005739 ORTHO05D007740 1.5e-132 476.9 362 66.3
Thhalv10028765m.g Eutrema salsugineum HOM05D005739 ORTHO05D007740 2.5e-132 476.1 351 65.2
Carub.0006s3279 Capsella rubella HOM05D005739 ORTHO05D007740 5.7e-132 474.9 349 64.8
Ah.14g088100 Amaranthus hybridus HOM05D005739 ORTHO05D007740 7.4e-132 474.6 436 56.2
CDE11G0579 Ceratophyllum demersum HOM05D005739 ORTHO05D007740 2.8e-131 472.6 350 64.3
AT4G04880 Arabidopsis thaliana HOM05D005739 ORTHO05D007740 3.7e-131 472.2 349 64.8
Lj1C1227G9 Lonicera japonica HOM05D005739 ORTHO05D007740 3.7e-131 472.2 362 65.7
Sp6g04100 Schrenkiella parvula HOM05D005739 ORTHO05D007740 3.7e-131 472.2 349 64.2
Eucgr.D01304 Eucalyptus grandis HOM05D005739 ORTHO05D007740 6.3e-131 471.5 363 63.9
SGA_v2.0_scaffold4G01929 Striga asiatica HOM05D005739 ORTHO05D007740 8.2e-131 471.1 368 64.7
Aa31LG9G9620 Aethionema arabicum HOM05D005739 ORTHO05D007740 1.1e-130 470.7 365 62.2
Zm00001eb110820 Zea mays HOM05D005739 ORTHO05D007740 1.4e-130 470.3 359 63.2
Medtr4g131840 Medicago truncatula HOM05D005739 ORTHO05D007740 1.8e-130 469.9 339 67.6
BcaB01g01842 Brassica carinata HOM05D005739 ORTHO05D007740 4.1e-130 468.8 349 63.9
THA.LOC104812968 Tarenaya hassleriana HOM05D005739 ORTHO05D007740 1.5e-129 466.8 340 66.5
Manes.16G010200 Manihot esculenta HOM05D005739 ORTHO05D007740 1.3e-128 463.8 316 69.9
AUR62012674 Chenopodium quinoa HOM05D005739 ORTHO05D007740 2.2e-128 463.0 362 64.6
Os07g0661000 Oryza sativa ssp. japonica HOM05D005739 ORTHO05D007740 1.8e-125 453.4 361 60.7
C09p33050 Brassica napus HOM05D005739 ORTHO05D007740 8.8e-125 451.1 319 67.1
SEGI_12484 Sequoiadendron giganteum HOM05D005739 ORTHO05D007740 9.7e-124 447.6 358 60.1
CANSAT56G1696 Cannabis sativa HOM05D005739 ORTHO05D007740 2.2e-123 446.4 302 72.8
AUR62021982 Chenopodium quinoa HOM05D005739 ORTHO05D007740 1.4e-122 443.7 424 55.2
Nitab4.5_0002155g0060 Nicotiana tabacum HOM05D005739 ORTHO05D007740 1.4e-122 443.7 405 57.5
HPP92_016316 Vanilla planifolia HOM05D005739 ORTHO05D007740 4.5e-121 438.7 367 57.8
Prupe.4G024100 Prunus persica HOM05D005739 ORTHO05D007740 9.4e-119 431.0 274 77.4
MBI18_g35070_MAGBIO Magnolia biondii HOM05D005739 ORTHO05D007740 2.0e-116 423.3 309 65.4
CiPaw.10G069300 Carya illinoinensis HOM05D005739 ORTHO05D007740 8.2e-115 417.9 287 72.8
Sc06g0010750 Simmondsia chinensis HOM05D005739 ORTHO05D007740 1.6e-110 403.7 283 70.7
Dinv17816 Davidia involucrata HOM05D005739 ORTHO05D007740 5.7e-108 395.2 274 71.2
unitig_92.g28118 Utricularia gibba HOM05D005739 ORTHO05D007740 9.7e-108 394.4 322 60.6
Mapoly0023s0135 Marchantia polymorpha HOM05D005739 ORTHO05D007740 3.6e-102 375.9 350 53.4
SMO343G0036 Selaginella moellendorffii HOM05D005739 ORTHO05D007740 1.8e-101 373.6 347 54.8
Dinv20033 Davidia involucrata HOM05D005739 ORTHO05D007740 5.2e-101 372.1 299 64.9
HPP92_016297 Vanilla planifolia HOM05D005739 ORTHO05D007740 1.5e-100 370.5 367 51.8
Hund23487 Selenicereus undatus HOM05D005739 ORTHO05D007740 1.3e-99 367.5 338 57.7
CAN.G105.13 Capsicum annuum HOM05D005739 ORTHO05D007740 1.2e-92 344.4 266 62.4
Sopen10g001300 Solanum pennellii HOM05D005739 ORTHO05D007740 4.4e-92 342.4 258 65.1
Aqoxy1G03635 Aquilegia oxysepala HOM05D005739 ORTHO05D007740 9.5e-87 324.7 264 60.6
AagrBONN_evm.TU.Sc2ySwM_368.535 Anthoceros agrestis HOM05D005739 ORTHO05D007740 6.1e-86 322.0 351 47.9
Pp3c11_7970 Physcomitrium patens HOM05D005739 ORTHO05D007740 2.3e-85 320.1 308 53.2
Cre03.g161000 Chlamydomonas reinhardtii HOM05D005739 ORTHO05D007740 1.6e-73 280.8 443 38.6
arahy.Tifrunner.gnm1.ann1.H0U1UD Arachis hypogaea HOM05D005739 ORTHO05D007740 6.2e-70 268.9 350 46.9
arahy.Tifrunner.gnm1.ann1.Q9UH73 Arachis hypogaea HOM05D005739 ORTHO05D007740 5.6e-55 219.2 350 38.9
MCO11G903 Micromonas commoda HOM05D005739 ORTHO05D007740 5.6e-55 219.2 352 38.6
arahy.Tifrunner.gnm1.ann1.53BRPK Arachis hypogaea HOM05D005739 ORTHO05D007740 1.1e-53 214.9 175 63.4
arahy.Tifrunner.gnm1.ann1.FSQL8E Arachis hypogaea HOM05D005739 ORTHO05D007740 8.4e-51 205.3 243 49.0
arahy.Tifrunner.gnm1.ann1.KZ0328 Arachis hypogaea HOM05D005739 ORTHO05D007740 1.3e-46 191.4 240 48.8
arahy.Tifrunner.gnm1.ann1.7V36PE Arachis hypogaea HOM05D005739 ORTHO05D007740 5.3e-45 186.0 210 51.9
arahy.Tifrunner.gnm1.ann1.0E5R4V Arachis hypogaea HOM05D005739 ORTHO05D007740 8.4e-43 178.7 180 55.6
arahy.Tifrunner.gnm1.ann1.B9PES8 Arachis hypogaea HOM05D005739 ORTHO05D007740 2.7e-41 173.7 180 53.9
arahy.Tifrunner.gnm1.ann1.AD56MI Arachis hypogaea HOM05D005739 ORTHO05D083983 3.9e-40 169.9 242 45.5
CANSAT64G1767 Cannabis sativa HOM05D005739 ORTHO05D033954 5.1e-40 169.5 113 71.7
CANSAT56G0563 Cannabis sativa HOM05D005739 ORTHO05D113818 7.6e-28 129.0 122 56.6
RcHm_v2.0_Chr5g0051251 Rosa chinensis HOM05D005739 ORTHO05D033954 6.0e-25 119.4 70 80.0
arahy.Tifrunner.gnm1.ann1.39644B Arachis hypogaea HOM05D005739 ORTHO05D007740 5.0e-19 99.8 200 37.5
Ca_29425_v3 Cicer arietinum L. HOM05D005739 ORTHO05D044167 1.3e-16 91.7 203 30.5
SEGI_28449 Sequoiadendron giganteum HOM05D005739 ORTHO05D033954 1.3e-14 85.1 72 52.8
arahy.Tifrunner.gnm1.ann1.3ZZ8UM Arachis hypogaea HOM05D000187 ORTHO05D000230 1.2e-12 78.6 49 75.5
Nn1g07096 Nelumbo nucifera HOM05D005739 ORTHO05D007740 5.1e-08 63.2 83 44.6
arahy.Tifrunner.gnm1.ann1.ZUJ3H1 Arachis hypogaea HOM05D005739 ORTHO05D083715 1.3e-06 58.5 35 80.0


User provided reference genes

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