Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 5.4e-40 167.2 82 100.0
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 1.2e-39 166.0 82 98.8
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.2e-39 166.0 82 98.8
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.2e-39 166.0 82 98.8
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.2e-39 166.0 82 98.8
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 1.3e-38 162.5 82 95.1
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 2.1e-36 155.2 82 89.0
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 4.8e-36 154.1 82 89.0
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 6.2e-36 153.7 82 87.8
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 1.1e-35 152.9 82 87.8
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 1.1e-35 152.9 82 87.8
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 2.4e-35 151.8 82 87.8
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 5.3e-35 150.6 82 87.8
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 6.9e-35 150.2 82 85.4
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 9.0e-35 149.8 80 87.5
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 1.5e-34 149.1 80 86.2
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.6e-34 148.3 82 86.6
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 3.4e-34 147.9 82 82.9
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 4.4e-34 147.5 82 85.4
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 4.4e-34 147.5 82 84.1
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 5.8e-34 147.1 82 84.1
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 5.8e-34 147.1 82 85.4
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 7.6e-34 146.7 82 85.4
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 7.6e-34 146.7 80 86.2
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 1.3e-33 146.0 80 86.2
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 1.3e-33 146.0 80 85.0
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 82.9
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 82.9
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 82.9
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 82.9
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 2.2e-33 145.2 82 84.1
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 2.2e-33 145.2 82 82.9
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 2.9e-33 144.8 84 85.7
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 2.9e-33 144.8 82 84.1
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 2.9e-33 144.8 82 81.7
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 2.9e-33 144.8 82 84.1
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 2.9e-33 144.8 82 81.7
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 3.8e-33 144.4 82 81.7
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 4.9e-33 144.1 82 82.9
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 4.9e-33 144.1 82 81.7
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 4.9e-33 144.1 82 81.7
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 4.9e-33 144.1 82 82.9
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 6.4e-33 143.7 82 81.7
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 8.4e-33 143.3 76 88.2
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 8.4e-33 143.3 82 80.5
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 8.4e-33 143.3 82 81.7
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 8.4e-33 143.3 76 88.2
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 1.4e-32 142.5 82 81.7
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 1.9e-32 142.1 76 85.5
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 2.4e-32 141.7 80 82.5
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 2.4e-32 141.7 76 85.5
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 2.4e-32 141.7 77 85.7
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 2.4e-32 141.7 82 81.7
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 3.2e-32 141.4 76 86.8
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 80.5
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 80.5
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 80.5
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 80.5
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 80.5
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 79.3
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 4.2e-32 141.0 80 85.0
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 84.2
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 84.2
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 84.2
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 84.2
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 84.2
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 84.2
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 86.8
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 7.1e-32 140.2 82 79.3
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 7.1e-32 140.2 76 85.5
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.2e-31 139.4 80 81.2
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 2.1e-31 138.7 82 81.7
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 2.1e-31 138.7 80 80.0
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 2.1e-31 138.7 80 80.0
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 2.7e-31 138.3 76 82.9
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 2.7e-31 138.3 76 82.9
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 2.7e-31 138.3 82 78.0
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 2.7e-31 138.3 77 81.8
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 3.5e-31 137.9 80 80.0
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 4.6e-31 137.5 82 75.6
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 4.6e-31 137.5 79 82.3
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 6.0e-31 137.1 76 82.9
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 6.0e-31 137.1 76 84.2
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 7.8e-31 136.7 76 85.5
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 7.8e-31 136.7 78 83.3
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 7.8e-31 136.7 78 80.8
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 1.0e-30 136.3 75 86.7
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 1.0e-30 136.3 82 73.2
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 1.3e-30 136.0 76 85.5
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 1.3e-30 136.0 76 85.5
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 1.3e-30 136.0 76 84.2
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 1.3e-30 136.0 82 76.8
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 1.7e-30 135.6 75 85.3
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 2.3e-30 135.2 75 84.0
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 3.0e-30 134.8 80 73.8
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 3.0e-30 134.8 82 76.8
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 3.0e-30 134.8 82 73.2
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 3.9e-30 134.4 80 76.2
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 5.1e-30 134.0 82 73.2
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 5.1e-30 134.0 82 74.4
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 5.1e-30 134.0 75 82.7
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 8.7e-30 133.3 82 74.4
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 8.7e-30 133.3 76 78.9
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 78.9
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 3.3e-29 131.3 76 81.6
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 4.3e-29 131.0 75 81.3
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 4.3e-29 131.0 75 80.0
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 5.6e-29 130.6 76 80.3
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 9.6e-29 129.8 77 77.9
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 9.6e-29 129.8 82 74.4
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 9.6e-29 129.8 76 75.0
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 1.3e-28 129.4 81 69.1
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.1e-28 128.6 76 82.9
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 4.8e-28 127.5 82 70.7
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 4.8e-28 127.5 77 77.9
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 6.2e-28 127.1 77 71.4
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 1.1e-27 126.3 80 75.0
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 1.1e-27 126.3 75 74.7
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 1.4e-27 125.9 82 74.4
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 1.8e-27 125.6 76 75.0
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 1.8e-27 125.6 82 68.3
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 2.6e-26 121.7 76 75.0
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 2.2e-25 118.6 80 63.8
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 6.4e-25 117.1 76 65.8
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 1.3e-22 109.4 80 56.2
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 2.5e-21 105.1 75 62.7
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 7.6e-18 93.6 75 54.7
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 1.7e-17 92.4 72 55.6
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 1.7e-17 92.4 80 51.2
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 1.1e-16 89.7 73 56.2
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 1.9e-16 89.0 49 77.6
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 1.8e-14 82.4 70 47.1
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 4.8e-12 74.3 74 45.9
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 6.2e-12 73.9 51 62.7
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.1e-11 73.2 69 58.0
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 6.9e-11 70.5 69 44.9
MBI15_g35018_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 2.6e-10 68.6 40 80.0
Aa31LG9G8470 Aethionema arabicum HOM05D005477 ORTHO05D006721 1.3e-09 66.2 38 78.9
Nitab4.5_0000217g0090 Nicotiana tabacum HOM05D005477 ORTHO05D006721 5.1e-06 54.3 40 57.5


User provided reference genes

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