Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.8e-233 811.6 421 100.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.7e-231 803.5 421 99.0
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-224 782.3 441 93.9
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.0e-222 776.5 441 93.2
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 5.0e-222 774.2 421 96.4
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.5e-202 709.5 421 88.1
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 5.9e-191 671.0 421 82.9
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 7.3e-189 664.1 421 81.9
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 4.4e-186 654.8 421 80.5
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.8e-183 644.0 422 79.9
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.9e-182 641.7 421 79.6
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.9e-181 639.4 420 78.8
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.9e-181 639.4 427 79.2
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.3e-181 638.6 422 79.1
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 8.0e-180 634.0 422 78.0
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 4.0e-179 631.7 422 78.4
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.9e-177 624.8 425 78.1
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 7.0e-176 620.9 421 77.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 9.2e-176 620.5 421 77.7
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.2e-175 620.2 426 77.7
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.2e-175 620.2 421 76.7
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.6e-175 619.8 424 77.4
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 7.8e-175 617.5 426 77.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.0e-174 617.1 421 76.0
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.7e-174 616.3 418 77.3
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 8.6e-174 614.0 423 75.9
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.3e-173 611.7 423 75.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.6e-173 611.3 425 74.8
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 5.6e-173 611.3 422 76.1
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.2e-172 610.1 421 75.3
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.6e-172 609.8 433 74.8
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.1e-172 609.4 423 75.7
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.7e-172 608.2 459 72.1
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.2e-172 607.8 424 75.0
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 8.1e-172 607.4 418 76.1
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.8e-171 606.3 426 75.6
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 8.9e-171 604.0 424 75.0
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.2e-170 603.6 420 74.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.2e-170 603.6 431 74.2
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 2.0e-170 602.8 426 76.3
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 3.4e-170 602.1 421 74.6
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 4.4e-170 601.7 423 76.8
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.8e-170 601.3 421 73.2
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 5.8e-170 601.3 424 75.7
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 7.5e-170 600.9 428 74.5
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 7.5e-170 600.9 423 75.4
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.7e-169 599.7 423 75.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.7e-169 599.7 421 72.9
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.7e-169 599.7 422 74.4
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.2e-169 599.4 429 75.5
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.1e-168 597.0 426 73.9
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.1e-168 597.0 421 74.8
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.4e-168 596.7 418 75.1
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.4e-168 596.7 421 72.4
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.4e-168 596.7 423 74.0
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.9e-168 596.3 427 74.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.4e-168 595.9 421 74.6
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.4e-168 595.9 440 73.0
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.4e-168 595.9 422 74.9
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.2e-168 595.5 426 73.0
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.6e-167 593.2 436 72.9
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 2.7e-167 592.4 418 74.6
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.3e-166 590.1 422 73.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.3e-166 590.1 441 73.0
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.3e-166 590.1 422 73.7
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.7e-166 589.7 425 73.4
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.9e-166 588.6 417 73.6
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.5e-165 586.6 423 73.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.9e-165 586.3 424 73.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 7.3e-165 584.3 425 72.9
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 7.3e-165 584.3 418 73.9
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 9.5e-165 583.9 425 72.9
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.2e-164 583.6 426 72.5
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-164 583.6 421 73.2
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.6e-164 582.0 431 72.9
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 4.7e-164 581.6 424 73.1
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 4.7e-164 581.6 433 72.5
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.7e-164 581.6 421 73.6
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 8.1e-164 580.9 427 72.6
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 2.4e-163 579.3 422 71.6
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 8.9e-163 577.4 421 71.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.0e-162 576.2 434 70.5
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 7.6e-162 574.3 426 71.4
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.9e-161 572.4 423 72.3
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 3.8e-161 572.0 423 72.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 2.4e-160 569.3 425 72.0
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.4e-160 569.3 425 72.2
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 7.1e-160 567.8 431 71.2
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 7.1e-160 567.8 418 72.0
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 9.2e-160 567.4 426 72.1
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 4.6e-159 565.1 425 71.8
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.0e-158 563.9 423 69.3
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.9e-158 562.0 421 70.8
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 2.9e-153 545.8 370 77.6
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 6.4e-153 544.7 427 68.6
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 8.4e-153 544.3 401 71.3
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 4.2e-152 542.0 351 80.3
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 9.3e-152 540.8 422 70.1
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.7e-151 539.3 371 74.9
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.7e-151 539.3 371 74.9
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.5e-151 538.9 423 68.8
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.3e-150 536.2 424 67.9
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 5.1e-150 535.0 428 68.2
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.0e-146 523.1 361 75.6
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 6.7e-142 508.1 489 60.7
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 6.7e-142 508.1 489 60.7
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.3e-140 503.8 326 79.8
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 7.6e-138 494.6 429 65.0
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 4.2e-136 488.8 421 63.4
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 8.7e-134 481.1 356 70.8
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.1e-132 476.5 428 59.6
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.9e-126 455.7 368 66.3
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 5.1e-126 455.3 437 55.6
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 2.0e-114 416.8 428 58.2
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 6.5e-113 411.8 363 58.1
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.0e-110 404.4 282 75.5
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 9.7e-109 397.9 418 56.2
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.7e-103 379.8 320 65.3
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 9.7e-101 371.3 324 65.1
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 4.2e-96 355.9 370 57.3
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 3.4e-85 319.7 330 54.2
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.6e-82 310.8 430 42.8
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.3e-76 288.5 471 39.7
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.0e-73 281.6 440 39.5
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.9e-72 277.3 271 58.3
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.8e-70 270.8 480 36.7
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.8e-63 246.9 336 43.2
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.7e-57 227.6 126 85.7
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.3e-56 222.2 326 40.8
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-50 204.5 144 73.6
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.2e-47 194.9 353 35.7
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.0e-45 187.6 346 33.8
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.1e-43 181.8 104 82.7
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.2e-43 180.3 104 81.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 6.0e-42 176.0 128 69.5
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.9e-36 156.4 130 65.4
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.0e-33 147.1 120 67.5
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 9.9e-29 132.1 108 65.7
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.1e-26 124.4 129 54.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.5e-24 117.5 65 89.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.5e-21 106.7 58 81.0
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.2e-18 98.6 97 56.7
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.3e-17 95.1 74 64.9
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 4.3e-16 90.1 133 43.6
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.6e-16 89.7 65 69.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.3e-15 88.6 106 47.2
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 4.0e-14 83.6 60 71.7
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.4e-11 75.1 47 76.6
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.1e-11 72.8 59 67.8
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.1e-10 71.2 52 65.4
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.9e-08 64.7 101 39.6
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 5.7e-08 63.2 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 5.7e-08 63.2 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 5.7e-08 63.2 36 83.3
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 1.6e-07 61.6 65 56.9
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 2.2e-07 61.2 63 54.0
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.2e-07 61.2 61 50.8
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 2.8e-07 60.8 66 56.1
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.4e-06 58.5 36 83.3
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 5.3e-06 56.6 44 61.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 9.0e-06 55.8 42 66.7
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 9.0e-06 55.8 205 23.9


User provided reference genes

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