Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.0e-212 740.7 416 100.0
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.4e-170 601.7 404 88.1
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 7.5e-170 600.9 404 88.1
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.2e-135 487.3 397 73.8
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.2e-132 474.9 428 70.8
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.1e-131 472.6 426 70.9
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 6.8e-131 471.5 432 70.6
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.0e-130 469.9 397 73.6
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.8e-130 468.4 433 69.1
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 7.5e-130 468.0 397 72.5
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.7e-129 465.7 431 69.4
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 6.4e-113 411.8 413 55.9
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.1e-112 411.0 425 56.9
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 1.4e-112 410.6 413 55.7
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 7.1e-112 408.3 413 57.4
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 7.8e-111 404.8 413 60.5
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 2.3e-110 403.3 418 54.5
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.3e-110 403.3 415 59.0
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 3.9e-110 402.5 418 63.9
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.9e-109 400.2 425 62.1
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.6e-108 397.1 430 54.4
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 2.8e-108 396.4 392 66.6
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 6.2e-108 395.2 418 54.8
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 1.1e-107 394.4 433 53.8
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 1.4e-107 394.0 426 62.0
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.8e-107 393.7 415 56.6
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 3.1e-107 392.9 421 62.0
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 6.9e-107 391.7 423 59.6
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.2e-106 391.0 433 59.6
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.5e-106 390.6 427 54.6
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 7.6e-106 388.3 414 62.6
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 3.8e-105 386.0 430 55.3
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 4.9e-105 385.6 425 62.1
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 6.4e-105 385.2 439 61.0
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 3.2e-104 382.9 420 59.0
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 4.2e-104 382.5 410 61.5
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 7.1e-104 381.7 425 61.6
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 7.1e-104 381.7 380 56.6
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 3.5e-103 379.4 423 62.2
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 3.5e-103 379.4 365 60.0
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 7.9e-103 378.3 428 61.2
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.0e-102 377.9 400 63.8
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.3e-102 377.5 412 59.5
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.8e-102 377.1 438 50.2
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 1.8e-102 377.1 420 61.0
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.8e-102 377.1 418 60.0
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 2.3e-102 376.7 431 60.1
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 2.3e-102 376.7 415 61.9
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 2.3e-102 376.7 435 59.8
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 5.1e-102 375.6 415 60.7
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 6.7e-102 375.2 388 64.7
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 8.7e-102 374.8 423 60.5
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.9e-101 373.6 365 60.3
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 3.3e-101 372.9 427 60.2
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 5.6e-101 372.1 424 56.8
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.8e-100 369.8 408 51.5
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 3.6e-100 369.4 402 52.0
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 8.1e-100 368.2 423 60.3
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 8.1e-100 368.2 371 66.8
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.1e-99 367.9 428 50.9
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 4.0e-99 365.9 399 62.7
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 5.8e-98 362.1 412 60.2
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 7.6e-98 361.7 419 53.0
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 2.9e-97 359.8 425 52.7
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 6.4e-97 358.6 371 62.0
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 8.4e-97 358.2 422 54.7
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 4.2e-96 355.9 402 52.5
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 9.3e-96 354.8 423 50.6
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.2e-95 354.4 413 49.6
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.2e-95 354.4 359 62.1
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 1.6e-95 354.0 425 53.9
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 1.6e-95 354.0 425 53.9
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 1.6e-95 354.0 424 52.6
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 2.1e-95 353.6 426 52.8
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 2.1e-95 353.6 426 52.8
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 2.7e-95 353.2 373 61.7
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 3.5e-95 352.8 423 55.1
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 6.0e-95 352.1 427 55.3
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 7.9e-95 351.7 425 57.2
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 7.9e-95 351.7 425 57.2
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 7.9e-95 351.7 425 57.2
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.3e-94 350.9 424 56.4
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 1.3e-94 350.9 423 54.6
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.8e-94 350.5 421 54.4
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 2.3e-94 350.1 416 55.8
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 3.0e-94 349.7 374 60.4
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 3.0e-94 349.7 374 63.1
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.5e-93 347.4 428 56.8
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 1.5e-93 347.4 428 56.8
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 2.5e-93 346.7 366 57.7
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 3.3e-93 346.3 368 57.1
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 3.3e-93 346.3 364 54.4
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 4.3e-93 345.9 386 54.9
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 5.6e-93 345.5 383 57.4
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.6e-92 344.0 421 56.5
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 3.7e-92 342.8 424 56.1
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 4.8e-92 342.4 425 51.8
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 6.2e-92 342.0 387 55.6
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 2.4e-91 340.1 353 53.0
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 9.0e-91 338.2 395 50.4
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 1.2e-90 337.8 367 59.1
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 4.5e-90 335.9 428 52.3
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 1.7e-89 334.0 335 60.0
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 1.2e-87 327.8 390 48.7
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.6e-87 327.4 386 52.3
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 2.1e-87 327.0 360 51.7
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 2.7e-87 326.6 337 63.8
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 4.6e-87 325.9 387 49.4
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 7.9e-87 325.1 396 58.3
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.0e-86 324.7 372 51.3
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 1.8e-86 323.9 360 51.1
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.6e-84 317.4 398 50.5
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 8.5e-81 305.1 362 56.6
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 4.6e-79 299.3 356 50.6
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 1.8e-78 297.4 365 53.7
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 1.1e-77 294.7 385 44.2
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 7.4e-77 292.0 380 43.9
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.4e-72 277.7 367 42.8
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.5e-72 276.9 402 40.3
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 4.6e-71 272.7 347 43.2
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 6.7e-70 268.9 348 47.7
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 8.8e-70 268.5 192 66.7
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 3.3e-69 266.5 291 67.0
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.3e-68 264.6 178 69.7
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 8.2e-68 261.9 341 43.1
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.2e-63 248.1 465 37.6
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 1.6e-63 247.7 316 57.0
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.6e-63 246.5 383 41.5
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.7e-55 220.3 273 63.4
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 1.2e-50 204.9 149 65.8
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.6e-50 204.5 286 57.7
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 1.3e-49 201.4 286 58.4
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 3.2e-48 196.8 124 71.0
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 3.7e-44 183.3 114 71.1
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 1.1e-40 171.8 282 44.0
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 4.0e-38 163.3 350 31.7
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.0e-38 163.3 130 56.9
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 7.8e-34 149.1 91 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 4.0e-30 136.7 254 35.4
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.4e-29 133.7 148 58.1
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 2.6e-21 107.5 116 52.6
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 6.6e-17 92.8 66 71.2
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 4.4e-13 80.1 40 85.0
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 3.7e-12 77.0 76 51.3


User provided reference genes

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