Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 3.9e-62 241.5 141 100.0
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 2.5e-40 169.1 151 76.8
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 2.2e-28 129.4 134 62.7
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 2.8e-28 129.0 119 66.4
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 1.8e-27 126.3 97 87.6
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 2.4e-27 125.9 97 86.6
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 4.5e-26 121.7 96 75.0
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 5.9e-26 121.3 150 52.7
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 2.2e-25 119.4 96 69.8
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 5.0e-25 118.2 150 52.0
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 7.2e-24 114.4 96 68.8
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 9.4e-24 114.0 97 78.4
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 1.2e-23 113.6 97 67.0
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 2.7e-23 112.5 96 67.7
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.9e-23 110.9 88 86.4
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 1.0e-22 110.5 96 68.8
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 1.4e-22 110.2 97 76.3
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 3.0e-22 109.0 81 74.1
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 3.0e-22 109.0 96 67.7
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 6.7e-22 107.8 97 66.0
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 1.1e-21 107.1 97 64.9
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 1.5e-21 106.7 107 57.9
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 2.0e-21 106.3 97 63.9
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 2.0e-21 106.3 97 61.9
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 3.3e-21 105.5 100 66.0
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 3.3e-21 105.5 96 64.6
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 4.4e-21 105.1 97 76.3
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 5.7e-21 104.8 96 64.6
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 7.4e-21 104.4 97 62.9
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 7.4e-21 104.4 97 75.3
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 7.4e-21 104.4 99 64.6
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 7.4e-21 104.4 99 64.6
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 7.4e-21 104.4 99 64.6
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 1.3e-20 103.6 103 62.1
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 1.3e-20 103.6 99 64.6
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 1.7e-20 103.2 96 64.6
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 1.7e-20 103.2 96 61.5
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 2.8e-20 102.4 96 63.5
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.7e-20 102.1 97 63.9
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 3.7e-20 102.1 98 63.3
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 6.3e-20 101.3 98 62.2
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 8.2e-20 100.9 97 63.9
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 1.4e-19 100.1 97 60.8
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 2.4e-19 99.4 97 71.1
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 2.4e-19 99.4 98 60.2
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 3.1e-19 99.0 96 59.4
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 3.1e-19 99.0 97 60.8
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 3.1e-19 99.0 97 59.8
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 4.1e-19 98.6 98 73.5
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 5.3e-19 98.2 100 60.0
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 5.3e-19 98.2 98 62.2
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 6.9e-19 97.8 99 63.6
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 6.9e-19 97.8 96 58.3
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 9.1e-19 97.4 96 58.3
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 1.2e-18 97.1 97 62.9
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 1.2e-18 97.1 96 60.4
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 1.5e-18 96.7 97 60.8
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 1.5e-18 96.7 96 57.3
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 1.5e-18 96.7 99 63.6
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 1.5e-18 96.7 99 60.6
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 2.0e-18 96.3 110 52.7
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.0e-18 96.3 97 58.8
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 2.0e-18 96.3 99 63.6
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 2.6e-18 95.9 96 59.4
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 3.4e-18 95.5 97 57.7
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 4.5e-18 95.1 96 62.5
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 4.5e-18 95.1 98 62.2
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 5.9e-18 94.7 92 59.8
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 5.9e-18 94.7 92 59.8
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 7.7e-18 94.4 100 57.0
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 3.8e-17 92.0 97 56.7
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 6.5e-17 91.3 97 57.7
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 6.5e-17 91.3 97 57.7
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 6.5e-17 91.3 97 56.7
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 6.5e-17 91.3 97 56.7
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 8.5e-17 90.9 97 54.6
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 8.5e-17 90.9 92 60.9
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 1.4e-16 90.1 92 55.4
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.9e-16 89.7 50 88.0
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 3.2e-16 89.0 88 58.0
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.2e-16 89.0 97 55.7
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 3.2e-16 89.0 50 88.0
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 4.2e-16 88.6 50 86.0
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 1.2e-15 87.0 50 88.0
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 1.6e-15 86.7 126 46.8
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 2.7e-15 85.9 50 88.0
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 2.7e-15 85.9 87 57.5
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 2.7e-15 85.9 91 52.7
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 6.1e-15 84.7 62 88.7
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 6.1e-15 84.7 98 62.2
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 1.4e-14 83.6 98 54.1
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 1.8e-14 83.2 48 85.4
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 1.8e-14 83.2 50 78.0
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 2.3e-14 82.8 50 78.0
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 1.5e-13 80.1 91 62.6
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.5e-13 80.1 50 76.0
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 4.4e-13 78.6 50 84.0
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 3.7e-12 75.5 49 69.4
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 3.1e-11 72.4 41 87.8
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 4.1e-11 72.0 49 69.4
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 2.9e-09 65.9 48 75.0
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 5.0e-09 65.1 47 68.1
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.5e-08 63.5 39 74.4
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 1.9e-08 63.2 44 65.9
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 4.2e-08 62.0 92 44.6


User provided reference genes

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