Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.8e-178 627.5 326 100.0
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.1e-172 609.0 329 96.7
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 9.0e-171 603.6 332 95.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.5e-170 602.8 332 95.5
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 5.9e-146 521.2 332 82.2
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.2e-133 480.3 330 76.4
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 2.7e-122 442.6 330 67.6
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 7.2e-120 434.5 333 68.2
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.3e-118 429.5 333 66.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.3e-108 397.1 318 62.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.1e-107 392.1 318 61.6
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.0e-105 387.5 332 59.6
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.7e-105 386.7 321 61.4
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 3.3e-104 382.5 321 60.4
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.2e-103 380.6 321 62.9
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 4.7e-103 378.6 324 60.5
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 8.0e-103 377.9 332 57.2
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.8e-102 376.7 330 58.5
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.9e-99 366.7 331 57.4
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.9e-99 366.7 321 59.2
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.4e-99 366.3 333 58.3
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.2e-99 364.4 331 58.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 9.2e-99 364.4 331 57.7
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.2e-98 364.0 328 58.2
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.0e-98 363.2 320 58.1
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.5e-98 362.5 331 58.3
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 6.0e-98 361.7 331 56.8
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.0e-97 360.9 326 58.6
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.3e-97 360.5 329 56.8
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 2.3e-97 359.8 331 56.5
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 3.0e-97 359.4 330 56.7
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.9e-97 359.0 331 56.8
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.1e-96 357.5 333 56.2
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.3e-96 355.9 323 58.2
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 3.3e-96 355.9 330 55.8
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 5.6e-96 355.1 332 56.0
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 7.3e-96 354.8 332 55.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 9.5e-96 354.4 323 56.0
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.2e-95 354.0 332 53.9
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 6.2e-95 351.7 334 54.5
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.8e-94 350.1 334 54.5
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.0e-94 349.0 332 55.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.2e-94 348.6 334 54.5
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 8.9e-94 347.8 323 56.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.2e-93 347.4 321 57.6
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.5e-93 347.1 333 53.8
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 9.9e-93 344.4 329 55.3
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.2e-92 343.2 322 55.9
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.4e-92 341.7 332 55.4
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.4e-91 339.7 330 56.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 4.1e-91 339.0 322 53.4
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.1e-91 338.2 323 56.7
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 9.2e-91 337.8 329 53.5
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.6e-90 335.5 324 56.8
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.0e-90 335.1 325 55.1
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.7e-89 333.6 328 54.9
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.0e-89 332.8 326 56.4
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 3.0e-89 332.8 327 54.7
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 3.0e-89 332.8 326 54.0
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.9e-89 332.4 328 52.4
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-88 330.9 326 52.1
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.1e-88 330.9 335 50.4
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 2.5e-88 329.7 325 53.2
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 3.3e-88 329.3 334 51.2
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 4.3e-88 328.9 330 53.3
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.8e-87 326.2 326 54.9
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 3.6e-87 325.9 323 54.5
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.7e-87 325.5 276 58.3
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 4.7e-87 325.5 318 54.1
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 8.1e-87 324.7 268 59.0
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.1e-86 324.3 329 51.7
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.8e-86 323.6 326 55.2
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.1e-86 322.8 384 46.6
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 6.8e-86 321.6 335 52.2
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 8.9e-86 321.2 329 51.4
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.2e-85 320.9 372 48.9
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.6e-85 319.7 336 52.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 7.6e-85 318.2 328 52.1
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 3.8e-84 315.8 332 50.9
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 6.4e-84 315.1 330 51.5
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 8.4e-84 314.7 322 53.7
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.6e-82 310.5 328 50.6
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.7e-82 309.7 344 49.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.7e-82 309.7 267 58.1
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 3.5e-82 309.3 321 52.3
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 6.0e-82 308.5 331 50.2
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 7.8e-82 308.1 323 50.2
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.3e-81 307.4 314 50.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.7e-81 307.0 344 48.5
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.7e-81 307.0 342 48.5
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 2.3e-81 306.6 351 50.1
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.0e-81 306.2 273 56.4
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.9e-81 305.8 344 48.3
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.1e-80 304.3 328 51.2
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.1e-80 304.3 325 52.0
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 9.6e-80 301.2 320 49.4
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.2e-79 300.8 322 53.4
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-79 300.8 315 49.2
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.8e-79 299.7 321 47.7
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 6.2e-79 298.5 320 50.9
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 8.1e-79 298.1 334 50.9
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 8.1e-79 298.1 334 50.9
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 8.1e-79 298.1 334 50.9
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 8.1e-79 298.1 325 46.8
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 9.0e-78 294.7 319 50.2
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 9.0e-78 294.7 330 48.8
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.2e-77 294.3 340 47.4
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.5e-77 293.9 248 61.3
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.4e-77 292.7 377 45.1
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 9.9e-77 291.2 325 49.5
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 4.9e-76 288.9 339 48.4
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.2e-74 284.3 334 48.5
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.2e-74 284.3 334 48.5
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.1e-74 283.5 333 48.3
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 4.6e-74 282.3 330 47.9
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 3.0e-73 279.6 332 47.6
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 6.6e-73 278.5 334 47.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 8.7e-73 278.1 307 48.5
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.9e-72 276.9 320 49.4
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.9e-72 276.9 315 47.9
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.6e-72 275.4 245 56.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 2.2e-68 263.5 340 45.9
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 4.9e-68 262.3 340 46.2
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.4e-67 260.0 327 47.1
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 3.2e-67 259.6 340 45.9
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 9.3e-67 258.1 317 47.6
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.6e-66 257.3 341 42.8
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 2.7e-66 256.5 219 58.0
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 3.9e-65 252.7 304 51.3
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.9e-65 252.7 312 45.2
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 3.3e-64 249.6 372 43.3
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 4.3e-64 249.2 238 53.8
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 6.9e-62 241.9 325 46.5
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 7.6e-61 238.4 297 45.5
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 3.8e-60 236.1 235 50.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.4e-60 235.3 331 43.2
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.4e-59 234.2 255 54.9
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.7e-58 229.9 318 41.8
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.1e-51 208.0 327 43.4
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.1e-50 203.8 334 40.4
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.9e-48 197.2 340 37.9
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.7e-48 195.7 216 51.9
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.7e-48 194.9 201 55.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.7e-47 193.0 201 55.7
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-47 192.2 179 53.6
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.4e-46 191.0 201 55.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.9e-44 183.3 153 57.5
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.5e-43 180.3 154 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 3.6e-42 176.4 230 43.5
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.1e-41 172.6 169 55.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.1e-41 172.6 322 38.2
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.9e-38 162.2 172 53.5
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.2e-35 152.1 151 49.7
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 2.3e-33 147.1 132 53.8
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.7e-31 141.0 157 49.0
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.3e-31 139.0 110 60.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 6.3e-31 139.0 142 50.7
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.6e-29 133.7 209 43.1
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.9e-28 130.2 206 43.2
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 8.5e-28 128.6 128 50.0
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.5e-27 125.9 132 53.0
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.8e-22 110.9 113 48.7
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 6.1e-18 95.9 224 32.1
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 8.0e-18 95.5 92 51.1
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 8.2e-15 85.5 90 47.8
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 8.2e-15 85.5 63 63.5
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.1e-11 75.1 67 53.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.2e-10 71.6 263 25.9
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.7e-10 69.7 303 24.8
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.3e-07 61.6 64 53.1
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 3.1e-06 57.0 35 71.4


User provided reference genes

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