Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.8e-78 293.5 160 100.0
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.4e-68 263.1 137 94.2
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.8e-62 240.4 163 77.3
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.6e-59 231.5 137 84.7
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 6.0e-59 231.1 138 85.5
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.9e-58 228.4 140 83.6
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 6.6e-50 201.1 137 70.1
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 2.4e-47 192.6 145 69.7
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 4.4e-46 188.3 147 68.7
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 8.4e-45 184.1 138 67.4
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 8.4e-45 184.1 140 65.0
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.1e-44 183.7 137 65.0
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.2e-44 182.2 138 62.3
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 7.1e-44 181.0 138 66.7
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 9.2e-44 180.6 137 64.2
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.6e-43 179.9 137 63.5
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.1e-43 179.5 140 64.3
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.7e-43 179.1 136 64.0
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.6e-43 178.3 123 68.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 7.8e-43 177.6 139 66.9
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.0e-42 177.2 116 69.8
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.3e-42 176.0 137 64.2
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.3e-42 176.0 140 60.7
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 3.0e-42 175.6 138 63.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 3.0e-42 175.6 137 64.2
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 3.0e-42 175.6 138 63.0
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 3.0e-42 175.6 136 62.5
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.9e-42 175.3 136 63.2
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 3.9e-42 175.3 140 64.3
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 3.9e-42 175.3 137 62.8
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 5.1e-42 174.9 136 61.8
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 6.6e-42 174.5 145 60.0
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 6.6e-42 174.5 137 62.8
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 8.7e-42 174.1 138 64.5
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.1e-41 173.7 134 64.2
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.1e-41 173.7 140 60.7
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.9e-41 172.9 138 63.8
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.9e-41 172.9 89 83.1
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.9e-41 172.9 137 62.8
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.5e-41 172.6 140 60.7
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 4.3e-41 171.8 135 63.7
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 5.6e-41 171.4 137 62.0
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 5.6e-41 171.4 136 62.5
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 7.3e-41 171.0 140 60.7
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 9.6e-41 170.6 131 69.5
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 9.6e-41 170.6 103 75.7
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 9.6e-41 170.6 134 64.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.2e-40 170.2 114 68.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.1e-40 169.5 139 62.6
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 2.8e-40 169.1 141 61.7
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 4.7e-40 168.3 141 60.3
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 4.7e-40 168.3 138 58.7
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 4.7e-40 168.3 142 62.7
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 4.7e-40 168.3 138 60.9
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.1e-39 167.2 145 58.6
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.4e-39 166.0 141 59.6
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.4e-39 166.0 134 63.4
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 3.1e-39 165.6 139 59.7
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 4.0e-39 165.2 141 58.2
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 4.0e-39 165.2 107 70.1
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.3e-39 164.9 138 59.4
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 6.9e-39 164.5 115 66.1
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 9.0e-39 164.1 134 61.9
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.0e-38 162.9 118 61.9
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 4.4e-38 161.8 83 81.9
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 4.4e-38 161.8 127 58.3
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.4e-38 161.8 84 84.5
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 7.6e-38 161.0 144 57.6
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 7.6e-38 161.0 144 57.6
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 7.6e-38 161.0 144 57.6
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.7e-37 159.8 138 55.8
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.9e-37 159.1 80 82.5
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.8e-37 158.7 135 58.5
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 4.9e-37 158.3 82 85.4
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.1e-36 157.1 83 81.9
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.1e-36 157.1 119 64.7
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.9e-36 156.4 82 81.7
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.9e-36 156.4 83 78.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.4e-36 156.0 138 56.5
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 3.2e-36 155.6 82 79.3
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.2e-36 155.6 134 56.7
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 4.2e-36 155.2 141 56.0
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 4.2e-36 155.2 115 62.6
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 7.1e-36 154.5 135 56.3
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 9.3e-36 154.1 82 78.0
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.2e-35 153.7 116 62.9
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.2e-35 153.7 116 62.9
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.2e-35 153.7 81 81.5
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.2e-35 153.7 84 75.0
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.2e-35 153.7 127 59.8
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.6e-35 153.3 83 79.5
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.6e-35 153.3 83 79.5
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.6e-35 153.3 144 53.5
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 6.0e-35 151.4 122 59.0
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 6.0e-35 151.4 116 59.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 7.8e-35 151.0 138 58.0
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.3e-34 150.2 135 54.8
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.3e-34 150.2 138 56.5
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.7e-34 149.8 138 56.5
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.3e-34 149.4 126 58.7
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.0e-34 149.1 127 56.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 3.0e-34 149.1 79 81.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 3.9e-34 148.7 121 62.8
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 5.1e-34 148.3 143 53.8
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 6.6e-34 147.9 143 53.8
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 6.6e-34 147.9 141 53.9
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 6.6e-34 147.9 127 55.1
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.5e-33 146.7 83 71.1
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.9e-33 146.4 129 58.1
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 9.6e-33 144.1 144 53.5
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.1e-31 140.6 75 81.3
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 4.0e-31 138.7 135 54.1
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.0e-30 136.3 137 54.7
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.6e-30 136.0 153 53.6
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 4.9e-29 131.7 68 80.9
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 4.2e-28 128.6 105 59.0
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.8e-26 123.2 109 56.9
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 6.7e-26 121.3 143 46.9
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.9e-25 119.8 162 41.4
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 4.3e-25 118.6 264 32.6
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 7.4e-25 117.9 106 59.4
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 2.1e-24 116.3 116 50.0
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.8e-24 115.9 94 63.8
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 2.4e-23 112.8 54 83.3
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.4e-23 112.8 52 88.5
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 5.8e-22 108.2 65 70.8
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 9.3e-20 100.9 82 52.4
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 6.0e-19 98.2 121 47.9
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 3.9e-18 95.5 67 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 6.7e-18 94.7 84 54.8
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 3.3e-17 92.4 89 49.4
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.3e-17 92.4 89 56.2
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 4.8e-16 88.6 138 39.9
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.6e-14 82.8 78 59.0
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 2.2e-13 79.7 51 66.7
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 2.9e-13 79.3 106 40.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 7.1e-12 74.7 98 43.9
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 2.3e-10 69.7 99 39.4
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 3.0e-10 69.3 46 63.0
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 6.7e-10 68.2 45 64.4
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 6.3e-08 61.6 41 61.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 3.1e-07 59.3 49 53.1


User provided reference genes

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