Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0435 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-66 255.4 118 100.0
FvH4_3g41160 Fragaria vesca HOM05D000007 ORTHO05D000017 9.8e-43 176.8 205 48.8
FvH4_3g40660 Fragaria vesca HOM05D000007 ORTHO05D000017 3.6e-21 105.1 212 35.4
FAN16G3614 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.6e-21 105.1 212 35.4
FAN11G2499 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.1e-21 104.0 212 35.4
FvH4_6g40070 Fragaria vesca HOM05D000027 ORTHO05D000066 1.5e-14 83.2 207 30.0
FAN14G1591 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-14 83.2 207 30.0
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.1e-13 77.4 60 63.3
RcHm_v2.0_Chr2g0154671 Rosa chinensis HOM05D000007 ORTHO05D000017 8.1e-13 77.4 80 48.8
FAN02G1127 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-12 76.6 109 41.3
FAN25G0977 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-12 75.9 95 45.3
FvH4_6g33740 Fragaria vesca HOM05D000007 ORTHO05D000017 3.1e-12 75.5 80 48.8
FAN05G1410 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-12 75.5 80 48.8
FAN09G3678 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-12 75.5 80 48.8
FAN14G2437 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-12 75.5 80 48.8
RcHm_v2.0_Chr2g0154581 Rosa chinensis HOM05D000007 ORTHO05D000017 3.1e-12 75.5 82 48.8
FAN02G1298 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.3e-12 74.7 80 47.5
FAN05G3599 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.3e-12 74.7 74 51.4
FAN09G3540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.3e-12 74.7 74 51.4
FAN05G3133 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.9e-12 74.3 61 59.0
RcHm_v2.0_Chr2g0154661 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-11 73.6 79 46.8
RcHm_v2.0_Chr2g0154711 Rosa chinensis HOM05D000007 ORTHO05D000017 2.6e-11 72.4 63 50.8
FvH4_2g08290 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-11 72.0 45 73.3
FAN24G0304 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.4e-11 72.0 45 73.3
RcHm_v2.0_Chr2g0154531 Rosa chinensis HOM05D000007 ORTHO05D000017 3.4e-11 72.0 45 68.9
RcHm_v2.0_Chr2g0154571 Rosa chinensis HOM05D000007 ORTHO05D000017 4.5e-11 71.6 45 75.6
RcHm_v2.0_Chr2g0154611 Rosa chinensis HOM05D000007 ORTHO05D000017 4.5e-11 71.6 79 46.8
FvH4_6g40000 Fragaria vesca HOM05D000007 ORTHO05D000017 7.6e-11 70.9 76 50.0
FAN06G2647 Fragaria x ananassa HOM05D000007 ORTHO05D019140 9.9e-11 70.5 79 41.8
FvH4_6g33751 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-10 70.1 74 48.6
RcHm_v2.0_Chr2g0154521 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-10 69.3 45 71.1
RcHm_v2.0_Chr2g0154541 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-10 69.3 45 73.3
MD17G1124300 Malus domestica HOM05D000007 ORTHO05D000017 4.9e-10 68.2 71 50.7
RcHm_v2.0_Chr2g0154681 Rosa chinensis HOM05D000007 ORTHO05D000017 8.4e-10 67.4 43 69.8
FvH4_6g40002 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-09 67.0 47 66.0
FvH4_7g25772 Fragaria vesca HOM05D000007 ORTHO05D019140 1.4e-09 66.6 79 40.5
RcHm_v2.0_Chr2g0154551 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-09 65.9 45 68.9
RcHm_v2.0_Chr2g0154601 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-09 65.9 47 61.7
FvH4_6g40030 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-09 65.5 67 49.3
FvH4_3g33320 Fragaria vesca HOM05D000007 ORTHO05D000017 4.2e-09 65.1 74 48.6
RcHm_v2.0_Chr2g0154641 Rosa chinensis HOM05D000007 ORTHO05D000017 4.2e-09 65.1 65 50.8
RcHm_v2.0_Chr2g0167131 Rosa chinensis HOM05D000007 ORTHO05D000017 5.5e-09 64.7 44 63.6
FAN11G2267 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.1e-09 64.3 74 48.6
FAN09G0290 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.3e-09 63.9 43 67.4
FAN09G2242 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.3e-09 63.9 67 47.8
RcHm_v2.0_Chr2g0154591 Rosa chinensis HOM05D000007 ORTHO05D000017 9.3e-09 63.9 56 53.6
FAN11G1320 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-08 63.5 47 63.8
CAN.G696.5 Capsicum annuum HOM05D001580 ORTHO05D000017 2.7e-08 62.4 84 44.0
MD09G1144500 Malus domestica HOM05D000007 ORTHO05D000017 2.7e-08 62.4 43 69.8
PSO170G1837 Papaver somniferum HOM05D000007 ORTHO05D000017 2.7e-08 62.4 42 54.8
RcHm_v2.0_Chr5g0060691 Rosa chinensis HOM05D000007 ORTHO05D000017 2.7e-08 62.4 44 63.6
FAN09G1614 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-08 62.0 54 53.7
FAN10G4360 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-08 62.0 186 28.5
RcHm_v2.0_Chr1g0347341 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-08 62.0 88 42.0
FAN02G3500 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.6e-08 61.6 44 65.9
FAN05G0839 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.6e-08 61.6 43 65.1
FvH4_6g40272 Fragaria vesca HOM05D000007 ORTHO05D000017 6.0e-08 61.2 44 63.6
FAN09G3728 Fragaria x ananassa HOM05D000007 ORTHO05D035403 7.9e-08 60.8 63 44.4
RcHm_v2.0_Chr5g0060711 Rosa chinensis HOM05D000007 ORTHO05D000017 7.9e-08 60.8 48 64.6
FAN02G3812 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.0e-07 60.5 44 61.4
Prupe.3G191200 Prunus persica HOM05D000007 ORTHO05D000017 1.0e-07 60.5 53 54.7
RcHm_v2.0_Chr2g0131321 Rosa chinensis HOM05D000007 ORTHO05D000039 1.0e-07 60.5 63 44.4
FvH4_6g39910 Fragaria vesca HOM05D000007 ORTHO05D000017 1.8e-07 59.7 49 53.1
FAN14G4497 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-07 59.7 49 53.1
Dinv38256 Davidia involucrata HOM05D000007 ORTHO05D000017 2.3e-07 59.3 62 43.5
FvH4_6g40090 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-07 59.3 78 43.6
FvH4_7g25410 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-07 59.3 46 58.7
FAN06G2196 Fragaria x ananassa HOM05D000007 ORTHO05D000399 2.3e-07 59.3 46 58.7
MD09G1144400 Malus domestica HOM05D000007 ORTHO05D000017 2.3e-07 59.3 43 69.8
Cc05_g01200 Coffea canephora HOM05D000007 ORTHO05D000017 3.0e-07 58.9 50 44.0
FvH4_4g09850 Fragaria vesca HOM05D000007 ORTHO05D000017 3.0e-07 58.9 45 55.6
FAN02G3574 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.0e-07 58.9 49 53.1
FAN07G2041 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.0e-07 58.9 45 55.6
FAN09G2562 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.0e-07 58.9 74 39.2
FAN09G3937 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.0e-07 58.9 74 39.2
FAN03G1910 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.9e-07 58.5 49 57.1
FAN07G2879 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.9e-07 58.5 45 53.3
SGA_v2.0_scaffold90G27930 Striga asiatica HOM05D012724 ORTHO05D010595 5.1e-07 58.2 45 55.6
FAN12G0542 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.7e-07 57.8 45 51.1
Prupe.1G567200 Prunus persica HOM05D000007 ORTHO05D000017 6.7e-07 57.8 43 55.8
FvH4_6g27880 Fragaria vesca HOM05D000007 ORTHO05D000039 8.7e-07 57.4 98 31.6
FAN01G1208 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.7e-07 57.4 45 57.8
FAN06G2105 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.7e-07 57.4 64 45.3
FAN14G0238 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.7e-07 57.4 98 31.6
PSO384G1847 Papaver somniferum HOM05D000007 ORTHO05D000017 8.7e-07 57.4 91 33.0
RcHm_v2.0_Chr1g0328801 Rosa chinensis HOM05D000007 ORTHO05D000017 8.7e-07 57.4 71 42.3
PSO063G0804 Papaver somniferum HOM05D000007 ORTHO05D011249 1.1e-06 57.0 63 46.0
RcHm_v2.0_Chr5g0061011 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-06 57.0 43 53.5
CSS0038812 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.5e-06 56.6 46 58.7
CSS0050410 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.5e-06 56.6 46 58.7
PSO017G2563 Papaver somniferum HOM05D000007 ORTHO05D000017 1.5e-06 56.6 42 57.1
PSO170G3674 Papaver somniferum HOM05D000007 ORTHO05D000017 1.5e-06 56.6 91 33.0
RcHm_v2.0_Chr1g0347171 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-06 56.6 79 39.2
RcHm_v2.0_Chr2g0131341 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-06 56.6 74 37.8
RcHm_v2.0_Chr2g0154441 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-06 56.6 45 57.8
FvH4_6g39930 Fragaria vesca HOM05D000007 ORTHO05D000017 1.9e-06 56.2 53 49.1
FAN01G3104 Fragaria x ananassa HOM05D000007 ORTHO05D000399 1.9e-06 56.2 46 56.5
FAN14G2810 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.9e-06 56.2 80 43.8
FAN16G2277 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.9e-06 56.2 47 57.4
MD04G1162000 Malus domestica HOM05D000007 ORTHO05D000017 1.9e-06 56.2 45 51.1
Medtr5g096630 Medicago truncatula HOM05D000007 ORTHO05D000039 1.9e-06 56.2 46 52.2
PSO017G7120 Papaver somniferum HOM05D000007 ORTHO05D000017 1.9e-06 56.2 73 43.8
FAN02G3393 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.5e-06 55.8 98 31.6
FAN16G1154 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.5e-06 55.8 48 60.4
RcHm_v2.0_Chr2g0131271 Rosa chinensis HOM05D000007 ORTHO05D000039 2.5e-06 55.8 74 37.8
RcHm_v2.0_Chr5g0006271 Rosa chinensis HOM05D000007 ORTHO05D000017 2.5e-06 55.8 48 58.3
Ca_06153_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000039 4.3e-06 55.1 50 50.0
Dinv17355 Davidia involucrata HOM05D058495 ORTHO05D035049 4.3e-06 55.1 80 38.8
FvH4_3g33531 Fragaria vesca HOM05D000007 ORTHO05D000017 5.6e-06 54.7 47 55.3
FAN25G1004 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.6e-06 54.7 47 55.3
PSO170G1888 Papaver somniferum HOM05D000007 ORTHO05D000017 5.6e-06 54.7 46 47.8
PSO478G1889 Papaver somniferum HOM05D000007 ORTHO05D000017 5.6e-06 54.7 63 41.3
MD09G1135400 Malus domestica HOM05D000007 ORTHO05D000017 7.4e-06 54.3 47 55.3
Nitab4.5_0000898g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000017 7.4e-06 54.3 73 39.7
PSO170G3421 Papaver somniferum HOM05D000007 ORTHO05D000017 7.4e-06 54.3 41 51.2
Peaxi162Scf00718g00028 Petunia axillaris HOM05D000007 ORTHO05D000017 7.4e-06 54.3 44 52.3
RcHm_v2.0_Chr5g0006261 Rosa chinensis HOM05D000007 ORTHO05D000017 7.4e-06 54.3 46 56.5
SalBow8G4571 Salvia bowleyana HOM05D000007 ORTHO05D000017 7.4e-06 54.3 54 46.3
Actinidia16812 Actinidia chinensis HOM05D000007 ORTHO05D000017 9.6e-06 53.9 121 30.6
CiPaw.07G037800 Carya illinoinensis HOM05D000007 ORTHO05D000017 9.6e-06 53.9 74 36.5
FvH4_1g03000 Fragaria vesca HOM05D000007 ORTHO05D000017 9.6e-06 53.9 72 37.5
FAN19G1652 Fragaria x ananassa HOM05D000007 ORTHO05D005026 9.6e-06 53.9 73 37.0
FAN23G0002 Fragaria x ananassa HOM05D000007 ORTHO05D005026 9.6e-06 53.9 73 37.0
FAN28G0255 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.6e-06 53.9 72 37.5
Medtr8g039500 Medicago truncatula HOM05D000007 ORTHO05D000039 9.6e-06 53.9 44 47.7
SGA_v2.0_scaffold90G27927 Striga asiatica HOM05D012724 ORTHO05D010595 9.6e-06 53.9 45 51.1
Thecc.04G270100 Theobroma cacao HOM05D000007 ORTHO05D000017 9.6e-06 53.9 43 55.8


User provided reference genes

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