Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.8e-126 454.9 239 100.0
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.2e-121 437.2 230 99.1
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.1e-120 433.7 234 96.2
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 4.5e-119 431.4 230 97.8
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.5e-119 431.4 230 97.8
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.8e-115 419.5 228 95.6
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 8.8e-99 364.0 227 85.9
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 3.5e-95 352.1 228 84.6
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 9.4e-93 344.0 230 83.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.7e-78 296.6 221 74.7
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 3.8e-78 295.4 237 69.2
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.5e-77 293.5 240 69.2
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.3e-77 292.4 245 67.3
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 5.6e-77 291.6 241 67.6
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 9.5e-77 290.8 237 67.9
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.8e-76 289.3 238 69.3
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.0e-75 287.3 235 70.2
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.0e-75 287.3 235 69.4
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.0e-75 287.3 238 68.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.4e-75 287.0 245 67.3
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 2.3e-75 286.2 237 67.1
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 5.2e-75 285.0 245 66.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.0e-74 283.1 237 67.1
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.4e-74 282.0 238 68.1
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 5.8e-74 281.6 237 67.9
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 7.5e-74 281.2 242 65.7
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.2e-73 279.6 208 72.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 8.3e-73 277.7 209 71.3
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.1e-72 277.3 241 65.6
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-72 275.8 241 64.7
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 3.2e-72 275.8 241 64.7
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 7.0e-72 274.6 235 66.8
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 9.2e-72 274.2 236 64.8
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 9.2e-72 274.2 237 64.6
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.2e-71 273.9 235 65.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.2e-71 273.9 247 64.8
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.6e-71 273.5 239 64.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.7e-71 272.7 238 64.3
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 2.7e-71 272.7 235 66.8
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.5e-71 272.3 246 64.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.5e-71 272.3 241 65.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 6.0e-71 271.6 235 64.7
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 7.8e-71 271.2 241 63.9
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.0e-70 270.8 242 67.4
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.7e-70 270.0 239 63.6
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.7e-70 270.0 241 63.9
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.3e-70 269.6 238 64.7
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 3.0e-70 269.2 236 64.0
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 3.0e-70 269.2 242 66.5
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.9e-70 268.9 241 63.1
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 5.0e-70 268.5 241 63.5
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 5.0e-70 268.5 242 65.3
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 6.6e-70 268.1 217 69.6
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 8.6e-70 267.7 246 63.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.1e-69 267.3 237 64.1
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.5e-69 266.9 242 64.9
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 5.6e-69 265.0 234 62.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 7.3e-69 264.6 206 70.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 9.5e-69 264.2 244 63.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 9.5e-69 264.2 244 63.5
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.2e-68 263.8 245 65.7
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-68 263.5 242 62.8
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.6e-68 263.5 237 65.0
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 2.1e-68 263.1 242 62.8
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 4.7e-68 261.9 242 63.6
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 6.2e-68 261.5 240 62.9
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 6.2e-68 261.5 210 67.6
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-67 260.8 270 59.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.1e-67 260.8 237 62.9
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.4e-67 260.4 242 65.3
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.4e-67 260.4 210 67.1
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.8e-67 260.0 226 64.6
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.3e-67 259.6 202 70.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.1e-67 259.2 242 61.6
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.2e-66 257.3 199 69.8
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-66 256.5 239 61.5
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 2.0e-66 256.5 206 68.9
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 5.8e-66 255.0 236 60.6
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.8e-66 255.0 238 60.1
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 7.5e-66 254.6 251 58.6
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.7e-65 253.4 235 61.3
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.7e-65 253.4 239 60.3
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.9e-65 252.7 239 61.9
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.1e-64 250.8 209 65.6
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-64 250.4 197 70.1
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.9e-64 250.0 196 68.4
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.4e-64 249.6 239 61.1
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.2e-64 249.2 249 60.2
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.2e-64 249.2 249 60.2
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.1e-64 248.8 249 60.2
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 9.2e-64 247.7 229 63.3
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.5e-63 245.7 204 67.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.0e-62 244.2 239 60.7
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.0e-62 244.2 236 58.1
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.3e-62 243.8 240 61.7
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.3e-62 243.8 235 58.7
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.7e-62 243.4 204 67.2
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 5.0e-62 241.9 204 66.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.1e-61 240.7 236 59.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.2e-60 237.3 201 67.7
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.6e-60 235.7 208 65.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.4e-58 228.8 231 55.8
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 6.4e-57 224.9 229 58.1
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.2e-56 222.6 239 54.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 3.2e-56 222.6 235 56.2
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 4.1e-56 222.2 198 63.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.2e-55 220.7 231 55.8
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 6.0e-55 218.4 243 56.4
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.7e-54 216.9 229 56.3
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.7e-54 216.9 229 55.9
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 8.6e-54 214.5 228 56.1
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 8.6e-54 214.5 228 55.7
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.1e-53 214.2 264 52.7
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.5e-53 213.0 261 52.9
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.3e-53 212.6 246 54.9
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 7.3e-53 211.5 236 53.0
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 9.5e-53 211.1 176 67.0
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.1e-52 209.9 200 59.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 2.1e-52 209.9 265 51.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.7e-52 208.8 219 55.7
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 6.2e-52 208.4 233 53.2
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.4e-51 207.2 197 58.9
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.4e-51 206.5 219 54.8
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 4.0e-51 205.7 199 59.3
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-50 203.4 164 68.3
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-50 203.4 164 68.3
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.0e-50 203.4 164 68.3
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 9.9e-50 201.1 264 51.9
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.2e-49 199.9 212 56.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 4.1e-48 195.7 162 66.7
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.5e-45 187.2 237 49.4
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 9.0e-43 177.9 200 56.0
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 3.4e-42 176.0 175 60.0
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.3e-41 174.1 185 55.7
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.2e-41 173.3 128 71.1
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 6.4e-41 171.8 202 54.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.4e-41 171.8 187 53.5
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.2e-39 167.5 225 48.9
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 4.3e-37 159.1 224 45.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 4.0e-35 152.5 157 53.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 4.0e-35 152.5 223 47.1
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.6e-34 149.8 200 50.0
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.4e-34 149.4 113 71.7
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.7e-33 147.1 193 51.3
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.8e-33 146.0 219 47.9
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 4.2e-32 142.5 99 74.7
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.5e-31 139.4 96 80.2
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 8.4e-25 118.2 200 43.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.1e-23 113.6 129 52.7
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.9e-23 111.7 89 60.7
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 2.1e-20 103.6 123 48.8
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 6.5e-17 92.0 125 48.0
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.9e-14 82.8 155 41.9
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 2.2e-12 77.0 85 55.3
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 3.7e-12 76.3 85 55.3
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-11 73.9 92 45.7
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 8.5e-09 65.1 70 57.1


User provided reference genes

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