Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0243 Fragaria x ananassa HOM05D006832 ORTHO05D008292 6.4e-90 334.3 204 100.0
FvH4_3g18000 Fragaria vesca HOM05D006832 ORTHO05D008292 9.5e-86 320.5 202 83.7
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 2.1e-80 302.8 198 82.3
FAN21G3714 Fragaria x ananassa HOM05D006832 ORTHO05D008292 6.0e-80 301.2 202 80.7
RcHm_v2.0_Chr5g0030051 Rosa chinensis HOM05D006832 ORTHO05D008292 6.6e-63 244.6 219 65.3
MD03G1246100 Malus domestica HOM05D006832 ORTHO05D008292 9.4e-33 144.4 215 44.2
Prupe.4G158600 Prunus persica HOM05D006832 ORTHO05D008292 5.1e-31 138.7 259 40.2
QL08p024452 Quercus lobata HOM05D006832 ORTHO05D008292 1.4e-23 114.0 129 54.3
CiPaw.11G157300 Carya illinoinensis HOM05D006832 ORTHO05D008292 7.4e-22 108.2 90 60.0
CANSAT56G2937 Cannabis sativa HOM05D006832 ORTHO05D008292 2.8e-21 106.3 212 36.3
Dinv15008 Davidia involucrata HOM05D006832 ORTHO05D008292 7.0e-20 101.7 151 41.7
Ciclev10020819m.g Citrus clementina HOM05D006832 ORTHO05D008292 2.0e-19 100.1 156 42.3
Gorai.013G174800 Gossypium raimondii HOM05D006832 ORTHO05D008292 3.5e-19 99.4 207 37.2
Atru.chr2.2055_Atru.chr2.2057 Acer truncatum HOM05D006832 ORTHO05D008292 4.5e-19 99.0 199 36.2
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 5.9e-19 98.6 151 43.7
Actinidia03616 Actinidia chinensis HOM05D006832 ORTHO05D008292 5.0e-18 95.5 139 43.9
Gohir.D13G154700 Gossypium hirsutum HOM05D006832 ORTHO05D008292 6.5e-18 95.1 208 38.5
Manes.15G097000 Manihot esculenta HOM05D006832 ORTHO05D008292 6.5e-18 95.1 209 36.4
GSVIVG01014166001 Vitis vinifera HOM05D006832 ORTHO05D008292 1.5e-17 94.0 154 41.6
Oeu021042.1 Olea europaea HOM05D006832 ORTHO05D008292 2.5e-17 93.2 143 43.4
Gohir.A13G150400 Gossypium hirsutum HOM05D006832 ORTHO05D008292 7.2e-17 91.7 207 35.7
Thecc.07G123300 Theobroma cacao HOM05D006832 ORTHO05D008292 7.2e-17 91.7 210 37.6
Sabra16G0248300 Salix brachista HOM05D006832 ORTHO05D008292 1.2e-16 90.9 156 39.1
MD11G1267100 Malus domestica HOM05D006832 ORTHO05D008292 2.7e-16 89.7 71 59.2
Potri.001G376900 Populus trichocarpa HOM05D006832 ORTHO05D008292 1.0e-15 87.8 148 41.2
Solyc10g007440.3 Solanum lycopersicum HOM05D006832 ORTHO05D008292 1.4e-15 87.4 147 38.1
Lalb_Chr25g0285711 Lupinus albus HOM05D006832 ORTHO05D008292 3.0e-15 86.3 215 32.1
Sopen10g003390 Solanum pennellii HOM05D006832 ORTHO05D008292 4.0e-15 85.9 154 37.7
PGSC0003DMG401021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 4.0e-15 85.9 147 38.1
RhsimUnG0013300 Rhododendron simsii HOM05D006832 ORTHO05D008292 5.2e-15 85.5 149 38.3
Rhsim04G0036900 Rhododendron simsii HOM05D006832 ORTHO05D008292 8.8e-15 84.7 149 38.3
Rhsim04G0036600 Rhododendron simsii HOM05D006832 ORTHO05D008292 1.2e-14 84.3 152 38.2
CAN.G904.32 Capsicum annuum HOM05D006832 ORTHO05D008292 3.3e-14 82.8 145 35.9
Nitab4.5_0000383g0030 Nicotiana tabacum HOM05D006832 ORTHO05D008292 4.4e-14 82.4 65 58.5
arahy.Tifrunner.gnm1.ann1.LUID63 Arachis hypogaea HOM05D006832 ORTHO05D008292 5.7e-14 82.0 129 41.1
Cc05_g10910 Coffea canephora HOM05D006832 ORTHO05D008292 9.7e-14 81.3 158 38.6
Cpa.g.sc77.49 Carica papaya HOM05D006832 ORTHO05D008292 1.7e-13 80.5 135 41.5
Cfa019523 Carpinus fangiana HOM05D006832 ORTHO05D008292 2.2e-13 80.1 214 31.8
Peaxi162Scf00692g00121 Petunia axillaris HOM05D006832 ORTHO05D008292 2.2e-13 80.1 109 41.3
TWI38G0771 Tripterygium wilfordii HOM05D006832 ORTHO05D008292 2.8e-13 79.7 136 39.7
arahy.Tifrunner.gnm1.ann1.U4EZEG Arachis hypogaea HOM05D006832 ORTHO05D008292 3.7e-13 79.3 129 39.5
THA.LOC104810427 Tarenaya hassleriana HOM05D006832 ORTHO05D008292 3.7e-13 79.3 142 41.5
Haze_09255 Corylus avellana HOM05D006832 ORTHO05D008292 4.8e-13 79.0 191 33.5
Glyma.13G266700 Glycine max HOM05D006832 ORTHO05D008292 4.8e-13 79.0 130 38.5
Haze_09257 Corylus avellana HOM05D006832 ORTHO05D008292 6.3e-13 78.6 304 28.3
MBI06_g10736_MAGBIO Magnolia biondii HOM05D006832 ORTHO05D008292 8.2e-13 78.2 139 40.3
Solyc10g007460.4 Solanum lycopersicum HOM05D006832 ORTHO05D008292 9.1e-12 74.7 138 36.2
Sopen10g003400 Solanum pennellii HOM05D006832 ORTHO05D008292 9.1e-12 74.7 144 34.0
CsaV3_4G032920 Cucumis sativus L. HOM05D006832 ORTHO05D008292 1.2e-11 74.3 81 49.4
Phvul.005G079500 Phaseolus vulgaris HOM05D006832 ORTHO05D008292 1.6e-11 73.9 145 37.9
vmacro09407 Vaccinium macrocarpon HOM05D006832 ORTHO05D008292 1.6e-11 73.9 94 44.7
ECA240G3607 Erigeron canadensis HOM05D000109 ORTHO05D000210 2.0e-11 73.6 102 42.2
SHI27646 Sapria himalayana HOM05D006832 ORTHO05D008292 2.0e-11 73.6 104 48.1
Sed0018751 Sechium edule HOM05D006832 ORTHO05D008292 3.5e-11 72.8 76 52.6
PGSC0003DMG403021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 3.5e-11 72.8 144 34.7
CARHR043680 Cardamine hirsuta HOM05D006832 ORTHO05D008292 5.9e-11 72.0 139 35.3
MSTRG.14973 Avicennia marina HOM05D006832 ORTHO05D008292 1.0e-10 71.2 146 33.6
MBI06_g16692_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D008292 1.3e-10 70.9 130 40.0
TAR627G1032 Trochodendron aralioides HOM05D006832 ORTHO05D008292 1.3e-10 70.9 150 36.7
MELO3C025659.2 Cucumis melo HOM05D006832 ORTHO05D008292 1.7e-10 70.5 107 43.9
Migut.M00714 Erythranthe guttata HOM05D006832 ORTHO05D008292 2.2e-10 70.1 142 33.1
Psat5g234400 Pisum sativum HOM05D006832 ORTHO05D008292 2.2e-10 70.1 145 36.6
ClCG11G017270 Citrullus lanatus HOM05D006832 ORTHO05D008292 3.8e-10 69.3 70 54.3
Gohir.D11G305300 Gossypium hirsutum HOM05D006832 ORTHO05D008292 3.8e-10 69.3 131 35.9
Gorai.007G327100 Gossypium raimondii HOM05D006832 ORTHO05D008292 3.8e-10 69.3 131 35.9
VMungo1080G1450 Vigna mungo HOM05D006832 ORTHO05D008292 3.8e-10 69.3 160 31.9
BcaB04g17079 Brassica carinata HOM05D006832 ORTHO05D008292 8.5e-10 68.2 152 32.9
Eucgr.F03237 Eucalyptus grandis HOM05D006832 ORTHO05D008292 8.5e-10 68.2 137 35.8
Lsat_1_v5_gn_9_100561 Lactuca sativa HOM05D006832 ORTHO05D008292 8.5e-10 68.2 98 38.8
C03p91530 Brassica napus HOM05D006832 ORTHO05D008292 1.5e-09 67.4 139 37.4
BolC3t21470H Brassica oleracea HOM05D006832 ORTHO05D008292 1.5e-09 67.4 139 37.4
MSTRG.6686 Avicennia marina HOM05D006832 ORTHO05D008292 3.2e-09 66.2 140 32.1
BcaC01g01392 Brassica carinata HOM05D006832 ORTHO05D008292 3.2e-09 66.2 143 37.1
AT1G53460 Arabidopsis thaliana HOM05D006832 ORTHO05D008292 5.5e-09 65.5 98 39.8
Thhalv10011680m.g Eutrema salsugineum HOM05D006832 ORTHO05D008292 7.2e-09 65.1 146 35.6
Medtr2g075470 Medicago truncatula HOM05D006832 ORTHO05D008292 7.2e-09 65.1 144 35.4
Nn3g21068 Nelumbo nucifera HOM05D006832 ORTHO05D008292 7.2e-09 65.1 160 32.5
Sc16g0007700 Simmondsia chinensis HOM05D006832 ORTHO05D008292 9.4e-09 64.7 138 34.1
VMungo1080G1649 Vigna mungo HOM05D006832 ORTHO05D008292 1.2e-08 64.3 147 34.0
Carub.0001s4265 Capsella rubella HOM05D006832 ORTHO05D008292 1.6e-08 63.9 145 34.5
Sp1g40000 Schrenkiella parvula HOM05D006832 ORTHO05D008292 1.6e-08 63.9 144 34.7
Aa31LG10G1740 Aethionema arabicum HOM05D006832 ORTHO05D008292 2.1e-08 63.5 66 53.0
BraA08t32210Z Brassica rapa HOM05D006832 ORTHO05D008292 2.1e-08 63.5 142 34.5
Ca_03944_v3 Cicer arietinum L. HOM05D006832 ORTHO05D008292 2.1e-08 63.5 129 36.4
PGR031G1976 Punica granatum HOM05D006832 ORTHO05D008292 2.1e-08 63.5 70 47.1
A08p01560 Brassica napus HOM05D006832 ORTHO05D008292 6.1e-08 62.0 145 34.5
Nn6g34457 Nelumbo nucifera HOM05D006832 ORTHO05D008292 6.1e-08 62.0 156 34.0
PGSC0003DMG400026458 Solanum tuberosum HOM05D000017 ORTHO05D000308 6.1e-08 62.0 64 48.4
unitig_899.g15298 Utricularia gibba HOM05D006832 ORTHO05D008292 1.0e-07 61.2 143 31.5
AL1G62020 Arabidopsis lyrata HOM05D006832 ORTHO05D008292 1.8e-07 60.5 140 32.1
Hund10460 Selenicereus undatus HOM05D006832 ORTHO05D008292 2.3e-07 60.1 138 34.1
Medtr2g075450 Medicago truncatula HOM05D006832 ORTHO05D008292 3.0e-07 59.7 120 32.5
SalBow1G6294 Salvia bowleyana HOM05D006832 ORTHO05D008292 5.2e-07 58.9 65 43.1
ATR0127G025 Amborella trichopoda HOM05D006832 ORTHO05D008292 6.8e-07 58.5 132 34.8
Gohir.A11G287600 Gossypium hirsutum HOM05D006832 ORTHO05D008292 6.8e-07 58.5 131 32.1
SalBow8G1352 Salvia bowleyana HOM05D006832 ORTHO05D008292 8.8e-07 58.2 65 43.1
Sopen12g022760 Solanum pennellii HOM05D006832 ORTHO05D008292 8.8e-07 58.2 65 44.6
CSS0011221 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 5.7e-06 55.5 145 33.8
CSS0014738 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 5.7e-06 55.5 142 34.5
MBI06_g16691_MAGBIO Magnolia biondii HOM05D006832 ORTHO05D008292 5.7e-06 55.5 54 50.0
Aqoxy1G01968 Aquilegia oxysepala HOM05D006832 ORTHO05D008292 7.5e-06 55.1 64 42.2
DCAR_013268 Daucus carota HOM05D006832 ORTHO05D008292 9.8e-06 54.7 78 39.7


User provided reference genes

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