Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1355.9 706 100.0
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1113.2 704 86.4
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 0.0e+00 1112.8 688 87.5
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1104.4 648 90.9
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 0.0e+00 1097.0 662 89.6
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 6.7e-304 1047.0 704 81.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.1e-271 939.9 696 73.6
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 4.4e-271 937.9 702 72.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.6e-268 929.5 704 72.4
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.6e-236 823.2 709 66.1
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.9e-230 801.6 662 67.1
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 4.1e-229 798.5 704 64.2
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.0e-223 779.6 672 63.1
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.0e-223 779.6 669 64.0
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.1e-221 773.9 664 64.8
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 3.2e-221 772.3 648 65.3
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.1e-220 769.6 653 64.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.7e-219 766.5 648 64.8
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.7e-219 766.5 620 66.6
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.5e-218 763.5 704 61.4
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.5e-218 762.7 647 63.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.3e-218 762.3 686 62.5
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 9.6e-218 760.8 664 64.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.1e-217 759.6 662 62.2
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 4.7e-217 758.4 649 63.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 4.7e-217 758.4 704 60.9
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 4.7e-217 758.4 707 60.5
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 6.2e-217 758.1 662 61.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.8e-216 754.6 707 60.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.4e-215 752.3 652 62.6
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 7.6e-215 751.1 687 60.4
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 7.6e-215 751.1 683 61.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 9.9e-215 750.7 657 63.6
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.3e-214 750.4 657 63.5
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.7e-214 750.0 647 62.9
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.9e-214 749.2 687 60.3
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.4e-213 746.9 662 61.6
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.9e-213 746.5 650 62.0
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.4e-213 746.1 690 60.3
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 5.4e-213 745.0 661 63.4
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 7.1e-213 744.6 689 59.7
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.1e-212 743.0 704 59.7
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 3.9e-211 738.8 650 61.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.5e-210 736.1 690 59.4
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 4.8e-209 731.9 659 61.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.2e-209 731.5 623 62.8
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 9.9e-207 724.2 643 62.4
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 5.4e-205 718.4 662 59.8
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.9e-202 709.9 662 58.0
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.6e-202 708.4 683 59.3
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 6.2e-201 704.9 702 56.4
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 8.1e-201 704.5 702 56.4
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.4e-200 703.7 667 57.1
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-199 699.5 665 57.9
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 9.9e-199 697.6 679 57.0
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-198 696.4 625 60.8
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.1e-197 694.1 663 56.9
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.9e-197 693.3 654 58.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.4e-197 691.8 702 56.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.6e-196 690.3 669 57.7
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 2.7e-196 689.5 686 56.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 7.4e-194 681.4 647 58.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.1e-193 679.9 666 56.6
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.8e-193 679.5 661 54.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 6.2e-193 678.3 663 56.6
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.8e-192 676.8 682 55.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.4e-192 676.4 694 55.8
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.5e-191 673.7 647 57.5
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.6e-191 672.9 666 58.0
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.4e-191 672.5 654 56.3
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 4.5e-191 672.2 672 56.7
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.8e-191 671.8 671 56.8
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 2.2e-190 669.8 693 53.2
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.2e-190 669.8 591 65.3
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 6.5e-190 668.3 645 57.5
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.1e-189 667.5 654 56.4
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 7.1e-189 664.8 647 57.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.2e-188 664.1 647 57.5
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.2e-188 664.1 668 56.0
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 6.0e-188 661.8 647 57.2
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.8e-187 660.2 647 56.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 3.9e-187 659.1 631 61.3
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.5e-186 657.1 670 55.1
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.8e-185 652.9 526 67.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 4.8e-185 652.1 667 55.8
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 8.2e-185 651.4 669 55.6
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 8.2e-185 651.4 669 55.6
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.8e-184 650.2 647 56.1
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 5.3e-184 648.7 661 54.5
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 5.0e-182 642.1 669 54.9
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.4e-181 640.6 659 54.2
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 4.2e-181 639.0 712 52.0
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.8e-177 626.3 539 61.4
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 9.0e-176 621.3 700 52.3
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 7.7e-175 618.2 667 52.6
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.7e-174 617.1 714 50.6
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 8.5e-174 614.8 702 50.3
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 5.5e-173 612.1 694 50.9
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.7e-172 609.8 642 52.6
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 3.8e-166 589.3 645 52.4
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.1e-162 577.8 528 57.8
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.5e-162 577.4 596 55.9
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.1e-152 544.7 577 54.1
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.8e-152 543.9 531 55.9
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.2e-150 537.0 679 47.0
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.9e-149 533.9 498 57.4
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.7e-145 519.6 643 47.0
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.7e-143 513.5 621 46.7
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.7e-143 513.5 655 44.4
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.7e-142 510.8 669 44.4
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 8.0e-140 501.9 696 46.4
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.2e-133 479.6 392 63.3
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 5.6e-125 452.6 420 60.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.1e-124 450.7 645 42.2
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.3e-123 447.2 667 40.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.2e-122 444.9 643 42.5
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 5.8e-122 442.6 410 62.0
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.3e-121 441.4 652 42.5
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.2e-119 434.9 642 39.9
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 3.5e-119 433.3 389 60.9
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 7.1e-88 329.3 401 48.9
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.4e-80 304.3 271 60.5
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 4.5e-74 283.5 244 61.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.1e-67 260.8 337 46.3
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 2.8e-60 237.7 224 57.1
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.7e-60 237.3 213 60.6
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.8e-60 236.9 234 55.6
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.5e-58 230.3 133 91.0
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.8e-54 218.4 402 36.6
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.3e-54 218.0 215 61.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-50 204.9 365 40.3
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 2.7e-47 194.5 337 39.5
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 5.2e-46 190.3 213 52.6
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.5e-40 172.2 173 52.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.5e-40 171.4 96 91.7
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-36 158.3 134 67.9
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-36 158.3 187 57.2
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-35 155.6 248 45.6
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-35 155.6 288 39.9
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.1e-35 154.5 132 68.9
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 4.5e-34 150.6 179 55.3
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 3.2e-32 144.4 82 91.5
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 5.5e-32 143.7 199 47.2
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 7.2e-32 143.3 88 84.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 2.0e-29 135.2 93 68.8
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.7e-28 131.0 254 39.8
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.8e-28 130.6 233 37.3
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.9e-26 123.6 126 59.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 6.5e-25 120.2 637 24.6
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.2e-24 117.5 69 89.9
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 8.0e-23 113.2 93 59.1
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.0e-22 112.8 67 89.6
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.5e-16 92.4 71 67.6
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 3.0e-14 84.7 61 65.6
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 9.2e-11 73.2 82 51.2
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.5e-08 65.9 63 54.0
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-08 65.5 71 50.7
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 8.0e-07 60.1 55 49.1
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-06 59.3 94 38.3
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 2.3e-06 58.5 47 57.4
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 4.0e-06 57.8 53 60.4
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 8.9e-06 56.6 211 25.1


User provided reference genes

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