Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.9e-293 1011.1 509 100.0
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 5.7e-289 996.9 505 98.6
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 8.2e-288 993.0 504 98.8
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.5e-278 960.7 505 96.2
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.9e-277 958.0 502 94.8
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 5.4e-239 830.9 506 82.8
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-234 816.6 504 82.1
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.6e-233 812.0 505 81.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 3.1e-226 788.5 487 80.5
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 9.0e-226 786.9 488 79.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.4e-223 779.6 501 77.0
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 4.2e-223 778.1 490 79.8
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 6.0e-222 774.2 489 79.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 8.7e-221 770.4 489 80.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.5e-220 769.6 485 79.0
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.9e-220 769.2 491 77.4
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 5.6e-220 767.7 501 76.6
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 2.1e-219 765.8 484 78.3
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.4e-218 763.1 490 77.8
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.8e-218 762.7 485 78.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.4e-218 762.3 484 78.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 5.3e-218 761.1 486 78.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 5.3e-218 761.1 486 78.0
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.0e-217 759.2 487 77.8
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.6e-217 757.3 497 75.9
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.6e-217 757.3 485 77.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.7e-216 756.1 500 76.0
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-216 755.7 485 77.7
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.9e-216 754.6 496 76.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-215 753.1 485 77.7
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.9e-215 752.7 489 76.7
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.9e-215 752.7 497 75.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.4e-215 752.3 483 77.0
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.4e-215 752.3 487 75.8
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 2.4e-215 752.3 485 77.3
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-214 750.0 496 75.8
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.5e-214 748.4 506 74.7
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 4.6e-214 748.0 511 75.0
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 5.1e-213 744.6 488 76.2
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 6.7e-213 744.2 490 74.9
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.7e-213 744.2 488 75.6
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 9.6e-212 740.3 487 75.6
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 2.8e-211 738.8 491 75.2
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.8e-211 738.0 485 75.7
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.4e-210 736.5 504 73.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.8e-210 736.1 502 74.3
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 4.0e-210 734.9 491 75.2
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 4.0e-210 734.9 487 75.6
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 4.0e-210 734.9 487 75.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 6.9e-210 734.2 490 73.9
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.2e-209 733.4 490 74.7
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.5e-209 733.0 492 74.2
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.0e-209 732.6 489 74.4
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.0e-209 732.6 491 74.5
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.0e-209 732.6 482 75.5
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.6e-209 732.3 492 74.2
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.4e-209 731.9 490 74.9
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.4e-209 731.9 490 73.5
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.4e-209 731.9 490 73.5
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.5e-209 731.5 491 74.9
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 4.5e-209 731.5 495 74.7
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 4.5e-209 731.5 489 75.3
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.5e-209 731.5 488 74.2
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 5.8e-209 731.1 490 74.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.8e-209 731.1 490 74.3
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 7.6e-209 730.7 486 76.1
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 7.6e-209 730.7 486 76.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.7e-208 729.6 490 74.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.9e-208 728.8 491 74.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.9e-208 728.8 488 74.0
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 3.8e-208 728.4 489 74.4
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 6.5e-208 727.6 528 70.3
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 8.4e-208 727.2 501 72.7
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.1e-207 726.9 494 73.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.4e-207 726.5 490 74.1
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.4e-207 726.5 499 72.5
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.2e-207 725.3 504 72.6
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-207 725.3 496 74.0
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.2e-207 725.3 480 76.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 5.5e-207 724.5 488 73.6
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 5.5e-207 724.5 504 73.2
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 7.1e-207 724.2 507 72.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.3e-205 719.9 486 74.1
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 2.3e-205 719.2 493 73.4
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 6.7e-205 717.6 500 72.6
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.3e-204 714.9 484 72.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 5.7e-204 714.5 479 74.9
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.3e-203 713.4 487 73.7
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 8.2e-203 710.7 497 73.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 8.2e-203 710.7 497 73.4
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.4e-202 709.9 480 74.0
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.1e-202 708.8 525 69.7
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.0e-200 701.4 480 72.9
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 2.7e-198 695.7 486 71.0
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 5.1e-197 691.4 486 71.8
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 9.7e-196 687.2 479 72.4
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 6.3e-195 684.5 498 69.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.4e-194 683.3 489 69.5
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 5.3e-194 681.4 504 69.6
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 3.4e-193 678.7 502 69.7
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.4e-193 678.7 479 70.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.7e-192 676.4 577 61.0
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 9.4e-191 670.6 516 68.0
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 2.7e-190 669.1 455 73.2
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.8e-189 666.4 490 67.3
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.4e-188 661.8 485 68.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.7e-187 659.8 490 70.0
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.2e-187 659.4 487 68.8
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 2.2e-187 659.4 514 66.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.8e-186 656.4 492 66.7
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 4.1e-186 655.2 501 65.3
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.6e-185 652.5 488 66.8
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 5.9e-185 651.4 489 66.7
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.8e-184 648.7 567 62.6
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 6.5e-184 647.9 492 65.7
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.8e-181 639.8 500 63.4
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 7.0e-178 627.9 476 67.9
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.0e-177 626.3 486 66.0
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.0e-176 624.0 488 67.0
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 4.2e-175 618.6 480 66.5
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 5.5e-175 618.2 484 64.9
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.4e-173 613.6 483 67.1
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.4e-172 608.6 405 76.0
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.2e-171 606.3 482 63.7
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.4e-165 587.0 505 63.0
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.5e-159 566.2 375 75.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.2e-158 563.9 457 61.3
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 6.1e-158 561.6 525 56.4
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.7e-153 546.2 491 58.0
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 3.8e-152 542.3 402 68.4
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.1e-151 540.8 357 76.5
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.5e-151 537.7 388 72.7
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.6e-150 537.0 347 77.2
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 5.8e-148 528.5 547 54.3
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.9e-147 525.4 355 74.6
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 7.3e-143 511.5 366 71.0
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.1e-141 507.7 391 68.3
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.4e-133 480.7 357 69.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.1e-125 453.0 303 75.2
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.4e-124 449.5 464 52.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-123 447.6 395 62.3
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.0e-120 436.4 302 71.5
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-117 426.8 280 76.1
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.2e-114 416.4 272 75.4
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 5.4e-114 415.6 275 75.3
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.4e-92 343.2 236 71.2
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.7e-81 307.0 250 67.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-80 304.7 191 78.0
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.4e-77 293.9 476 37.2
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.0e-75 286.2 171 81.3
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 5.7e-71 272.7 205 71.7
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 2.1e-65 254.2 200 61.0
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 2.2e-54 217.6 325 42.8
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 8.3e-54 215.7 134 80.6
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-52 211.5 229 51.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 8.5e-51 205.7 294 46.6
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 8.5e-51 205.7 132 78.0
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.7e-49 200.7 153 68.0
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.7e-49 200.7 131 73.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.5e-47 194.9 140 70.0
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.3e-43 181.0 114 76.3
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 3.7e-38 163.7 113 66.4
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.4e-37 161.8 114 70.2
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.5e-36 156.8 97 76.3
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.5e-36 156.8 97 76.3
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 4.4e-31 140.2 205 41.5
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-25 121.3 97 66.0
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 3.6e-25 120.6 74 79.7
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.4e-24 118.6 97 67.0
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 8.9e-24 115.9 63 90.5
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 7.5e-23 112.8 60 90.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.4e-21 106.7 64 81.2
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.6e-20 103.6 77 68.8
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.6e-20 103.6 64 78.1
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.0e-19 102.4 67 71.6
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.3e-19 102.1 64 76.6
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 3.0e-19 100.9 187 39.0
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-18 99.0 65 76.9
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.1e-17 94.7 76 67.1
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.3e-11 74.7 46 71.7
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 6.2e-09 66.6 38 73.7
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 6.2e-09 66.6 48 79.2


User provided reference genes

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