Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.9e-213 744.2 372 100.0
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 1.7e-202 709.1 406 89.4
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.9e-201 705.7 415 87.5
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.2e-200 700.7 425 85.2
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 8.6e-194 680.2 426 82.6
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.1e-193 679.9 411 85.4
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 6.2e-184 647.5 411 79.8
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.3e-181 639.8 411 78.6
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.9e-180 636.0 411 79.1
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.1e-172 610.1 411 75.7
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 9.3e-172 607.1 409 75.3
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 4.6e-171 604.7 411 74.0
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 7.9e-171 604.0 411 74.2
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 1.8e-170 602.8 410 73.9
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.0e-170 602.1 411 75.7
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 3.9e-170 601.7 411 75.7
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.9e-169 599.4 396 75.3
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 4.3e-169 598.2 399 74.9
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 5.6e-169 597.8 407 72.5
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 7.4e-169 597.4 416 72.4
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.8e-167 592.8 408 73.0
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 2.4e-167 592.4 407 73.2
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 3.1e-167 592.0 406 72.4
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 4.0e-167 591.7 405 73.1
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 4.0e-167 591.7 405 73.1
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 4.0e-167 591.7 411 72.5
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 4.0e-167 591.7 399 74.9
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.2e-166 590.1 403 73.4
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.2e-166 590.1 411 72.3
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 1.5e-166 589.7 409 72.6
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.5e-166 589.7 411 72.5
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 2.0e-166 589.3 409 72.4
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 4.5e-166 588.2 400 73.2
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 4.5e-166 588.2 409 73.6
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.8e-166 587.8 449 67.0
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 7.6e-166 587.4 400 73.2
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 1.0e-165 587.0 407 71.5
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 1.3e-165 586.6 411 72.0
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 2.9e-165 585.5 406 72.2
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 8.4e-165 583.9 405 71.1
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 1.1e-164 583.6 409 71.9
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 1.1e-164 583.6 409 71.6
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 1.4e-164 583.2 433 69.1
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 3.2e-164 582.0 411 72.5
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 3.2e-164 582.0 407 70.8
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 5.5e-164 581.3 416 70.4
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 5.5e-164 581.3 409 70.7
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 5.5e-164 581.3 383 76.0
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 7.1e-164 580.9 428 69.4
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 9.3e-164 580.5 408 72.1
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 1.2e-163 580.1 407 71.5
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.6e-163 579.7 406 73.4
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 2.1e-163 579.3 400 72.5
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 2.1e-163 579.3 406 70.9
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 2.1e-163 579.3 407 71.3
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 2.7e-163 578.9 402 72.4
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 2.7e-163 578.9 410 70.2
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 2.7e-163 578.9 411 70.8
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 3.5e-163 578.6 404 73.0
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 7.9e-163 577.4 410 70.2
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 1.8e-162 576.2 389 74.0
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 2.3e-162 575.9 453 67.1
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 2.3e-162 575.9 408 69.4
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 3.9e-162 575.1 401 71.6
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 6.7e-162 574.3 402 71.1
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 8.7e-162 573.9 414 70.3
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 1.1e-161 573.5 391 74.4
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 2.5e-161 572.4 381 73.0
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.3e-160 570.1 399 71.7
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.8e-160 568.9 407 71.3
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.8e-160 568.9 407 71.3
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 6.3e-160 567.8 404 70.0
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.4e-159 566.6 399 71.7
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.4e-159 566.6 404 72.3
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.4e-159 566.6 404 72.3
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.8e-159 566.2 408 70.8
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.4e-159 565.8 399 71.4
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 3.1e-159 565.5 402 70.6
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 4.1e-159 565.1 411 69.3
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 4.1e-159 565.1 411 69.6
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 5.3e-159 564.7 406 70.4
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.3e-159 564.7 459 64.5
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 9.0e-159 563.9 399 71.4
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 2.6e-158 562.4 400 70.8
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 3.4e-158 562.0 402 69.2
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 4.5e-158 561.6 394 71.1
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 4.5e-158 561.6 402 70.1
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 2.2e-157 559.3 400 68.8
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 1.9e-156 556.2 403 69.2
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 7.2e-156 554.3 393 69.0
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.2e-155 553.5 398 69.3
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 1.2e-155 553.5 402 68.2
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.1e-155 552.7 403 70.0
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 3.9e-154 548.5 381 70.6
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 6.7e-154 547.7 424 66.0
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 5.7e-153 544.7 411 67.4
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.2e-152 542.7 372 74.5
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 9.0e-151 537.3 439 63.8
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.5e-150 536.6 385 69.1
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 6.5e-149 531.2 441 63.9
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 8.5e-149 530.8 424 62.5
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 1.9e-148 529.6 398 67.6
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 2.5e-148 529.3 413 64.9
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 7.2e-148 527.7 490 57.3
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.7e-147 525.8 398 67.1
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 3.0e-146 522.3 389 67.4
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 1.7e-144 516.5 399 63.9
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.9e-142 508.1 409 66.7
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 1.4e-140 503.4 351 72.4
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 6.7e-138 494.6 351 72.1
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.0e-137 493.0 392 66.6
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.6e-137 492.7 358 68.4
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 3.3e-137 492.3 409 63.3
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 7.4e-137 491.1 400 61.0
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.8e-136 488.4 359 67.1
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.9e-132 476.5 370 65.4
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 8.0e-131 471.1 378 64.6
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 3.0e-130 469.2 419 55.6
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.5e-129 466.8 417 57.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 8.0e-123 444.5 396 57.1
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.3e-120 437.2 391 61.6
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 3.5e-118 429.1 313 70.0
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 2.9e-117 426.0 395 53.9
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 5.2e-106 388.7 361 58.7
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 4.1e-103 379.0 368 58.7
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 9.8e-97 357.8 410 47.6
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 4.9e-96 355.5 215 79.5
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 5.4e-95 352.1 205 82.9
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 6.6e-93 345.1 203 81.3
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 3.6e-91 339.3 411 45.3
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 2.0e-89 333.6 197 81.2
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 7.3e-84 315.1 443 41.8
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 6.2e-83 312.0 277 62.1
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 2.2e-80 303.5 256 63.7
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.4e-79 300.8 405 44.4
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.1e-77 292.4 373 46.4
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 4.3e-76 289.3 241 62.7
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 8.7e-69 265.0 329 45.9
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 2.8e-67 260.0 158 79.1
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 8.4e-64 248.4 153 75.2
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 2.4e-63 246.9 454 35.7
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.8e-59 232.6 256 54.7
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.9e-56 223.4 218 59.6
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.4e-55 221.1 179 67.0
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.7e-54 216.9 164 70.7
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.9e-52 210.7 220 56.4
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 4.3e-52 209.5 426 34.5
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-47 194.9 137 69.3
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.2e-47 193.4 118 78.8
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.9e-46 188.7 297 44.1
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 1.4e-34 151.4 238 39.9
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.2e-32 144.1 94 75.5
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 1.9e-31 141.0 122 59.8
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 6.7e-29 132.5 266 33.5
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 2.6e-28 130.6 85 71.8
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.3e-27 125.9 254 33.9
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 1.5e-25 121.3 83 68.7
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 4.5e-25 119.8 83 68.7
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 1.4e-21 108.2 66 77.3
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 1.1e-20 105.1 57 78.9
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 2.6e-20 104.0 67 70.1
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 1.2e-12 78.6 58 60.3
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 4.4e-12 76.6 220 29.1
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 9.7e-12 75.5 53 71.7
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.7e-11 74.7 43 74.4
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 2.5e-07 60.8 53 62.3
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 2.5e-07 60.8 114 32.5
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 2.5e-07 60.8 53 60.4
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 5.5e-07 59.7 133 33.1


User provided reference genes

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