Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.7e-282 975.3 494 100.0
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 9.6e-241 836.6 494 89.1
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.1e-240 835.5 494 89.1
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.9e-237 825.1 494 88.1
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.1e-235 818.9 494 87.9
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 3.3e-233 811.6 493 86.2
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 2.5e-204 715.7 498 75.3
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 1.3e-200 703.4 494 74.7
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 1.8e-199 699.5 494 74.1
Haze_09726 Corylus avellana HOM05D004980 ORTHO05D006505 2.9e-189 665.6 502 69.1
Atru.chr2.3504 Acer truncatum HOM05D004980 ORTHO05D006505 5.0e-189 664.8 495 70.7
Cfa020293 Carpinus fangiana HOM05D004980 ORTHO05D006505 5.5e-188 661.4 502 69.1
CiPaw.12G132600 Carya illinoinensis HOM05D004980 ORTHO05D006505 1.6e-187 659.8 496 70.0
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 2.0e-185 652.9 494 69.8
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 1.3e-184 650.2 498 68.9
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 1.3e-184 650.2 495 69.5
Ciclev10008197m.g Citrus clementina HOM05D004980 ORTHO05D006505 2.2e-184 649.4 501 69.3
QL08p007075 Quercus lobata HOM05D004980 ORTHO05D006505 2.8e-184 649.0 488 69.1
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 1.4e-183 646.7 494 68.8
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 9.1e-183 644.0 498 69.3
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 1.2e-182 643.7 498 68.5
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 3.5e-182 642.1 498 68.3
COL.COLO4_09708 Corchorus olitorius HOM05D004980 ORTHO05D006505 4.5e-182 641.7 500 67.8
Thecc.07G030400 Theobroma cacao HOM05D004980 ORTHO05D006505 5.9e-182 641.3 496 67.9
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 2.2e-181 639.4 498 67.5
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 1.9e-180 636.3 498 65.9
Rhsim06G0222400 Rhododendron simsii HOM05D004980 ORTHO05D006505 6.1e-179 631.3 499 66.9
Nn3g21061 Nelumbo nucifera HOM05D004980 ORTHO05D006505 8.0e-179 630.9 498 66.7
Gohir.A01G052750 Gossypium hirsutum HOM05D004980 ORTHO05D006505 1.4e-178 630.2 499 67.3
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 1.2e-177 627.1 498 66.1
Duzib268G1663 Durio zibethinus HOM05D004980 ORTHO05D006505 2.6e-177 625.9 500 66.6
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 2.6e-177 625.9 495 67.1
Gohir.D05G373600 Gossypium hirsutum HOM05D004980 ORTHO05D006505 2.8e-176 622.5 499 66.7
Gorai.009G442300 Gossypium raimondii HOM05D004980 ORTHO05D006505 1.8e-175 619.8 499 66.5
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 7.0e-175 617.8 490 66.5
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 2.0e-174 616.3 490 66.5
Sp6g17070 Schrenkiella parvula HOM05D004980 ORTHO05D006505 2.7e-174 615.9 500 66.2
BraA02t06050Z Brassica rapa HOM05D004980 ORTHO05D006505 1.0e-173 614.0 502 65.7
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 1.0e-173 614.0 486 66.0
BolC2t07741H Brassica oleracea HOM05D004980 ORTHO05D006505 2.3e-173 612.8 499 65.5
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 5.0e-173 611.7 491 65.6
Lju1319A3G37 Lonicera japonica HOM05D004980 ORTHO05D006505 8.6e-173 610.9 509 64.6
Lsat_1_v5_gn_5_3221 Lactuca sativa HOM05D004980 ORTHO05D006505 1.1e-172 610.5 496 65.7
A10p12400 Brassica napus HOM05D004980 ORTHO05D006505 2.5e-172 609.4 499 65.5
Sc16g0005820 Simmondsia chinensis HOM05D004980 ORTHO05D006505 2.5e-172 609.4 495 65.1
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 3.2e-172 609.0 499 64.7
ECA246G3869 Erigeron canadensis HOM05D004980 ORTHO05D006505 5.5e-172 608.2 500 65.4
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 5.5e-172 608.2 500 65.6
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 7.2e-172 607.8 499 65.1
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 7.2e-172 607.8 491 65.8
BraA10t43335Z Brassica rapa HOM05D004980 ORTHO05D006505 9.5e-172 607.4 499 65.5
BcaC03g14262 Brassica carinata HOM05D004980 ORTHO05D006505 1.6e-171 606.7 499 65.3
BolC9t57438H Brassica oleracea HOM05D004980 ORTHO05D006505 1.6e-171 606.7 499 65.5
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 2.1e-171 606.3 496 64.5
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 4.7e-171 605.1 495 64.6
C02p16390 Brassica napus HOM05D004980 ORTHO05D006505 1.0e-170 604.0 499 64.9
Cc08_g05680 Coffea canephora HOM05D004980 ORTHO05D006505 1.4e-170 603.6 501 62.7
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 1.4e-170 603.6 489 66.7
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 1.8e-170 603.2 498 64.3
BcaC04g20267 Brassica carinata HOM05D004980 ORTHO05D006505 2.3e-170 602.8 499 65.1
C09p45860 Brassica napus HOM05D004980 ORTHO05D006505 2.3e-170 602.8 499 64.7
Glyma.14G019100 Glycine max HOM05D004980 ORTHO05D006505 3.0e-170 602.4 490 65.5
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 3.0e-170 602.4 520 62.9
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 5.2e-170 601.7 491 65.4
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 5.2e-170 601.7 502 63.5
Ah.06g182490 Amaranthus hybridus HOM05D004980 ORTHO05D006505 6.8e-170 601.3 495 64.0
CARHR268470 Cardamine hirsuta HOM05D004980 ORTHO05D006505 6.8e-170 601.3 499 65.1
Glyma.02G293600 Glycine max HOM05D004980 ORTHO05D006505 6.8e-170 601.3 490 65.3
MSTRG.17982 Avicennia marina HOM05D004980 ORTHO05D006505 1.2e-169 600.5 490 64.5
EL10Ac4g07745 Beta vulgaris HOM05D004980 ORTHO05D006505 1.5e-169 600.1 496 63.7
A02p09860 Brassica napus HOM05D004980 ORTHO05D006505 1.5e-169 600.1 523 62.9
Thhalv10013463m.g Eutrema salsugineum HOM05D004980 ORTHO05D006505 9.8e-169 597.4 493 65.3
Solyc07g064850.3 Solanum lycopersicum HOM05D004980 ORTHO05D006505 9.8e-169 597.4 496 63.7
Sopen07g033050 Solanum pennellii HOM05D004980 ORTHO05D006505 9.8e-169 597.4 496 63.7
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 9.8e-169 597.4 496 63.7
PSO541G1224 Papaver somniferum HOM05D004980 ORTHO05D006505 1.3e-168 597.0 501 62.9
AUR62015838 Chenopodium quinoa HOM05D004980 ORTHO05D006505 2.2e-168 596.3 487 63.4
GSVIVG01037705001 Vitis vinifera HOM05D004980 ORTHO05D006505 2.2e-168 596.3 426 72.5
CAN.G337.68 Capsicum annuum HOM05D004980 ORTHO05D006505 3.7e-168 595.5 500 63.2
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 6.3e-168 594.7 499 64.3
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 1.8e-167 593.2 499 64.3
Sed0018379 Sechium edule HOM05D004980 ORTHO05D006505 1.8e-167 593.2 493 64.3
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 2.4e-167 592.8 499 63.1
Hund23210 Selenicereus undatus HOM05D004980 ORTHO05D006505 2.4e-167 592.8 497 63.0
AT5G55130 Arabidopsis thaliana HOM05D004980 ORTHO05D006505 3.1e-167 592.4 499 64.1
Oeu057850.1 Olea europaea HOM05D004980 ORTHO05D006505 4.1e-167 592.0 495 64.0
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 4.1e-167 592.0 501 62.1
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 4.1e-167 592.0 499 62.7
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 1.3e-165 587.0 486 63.8
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 1.7e-165 586.6 493 64.5
Aa31LG3G11110 Aethionema arabicum HOM05D004980 ORTHO05D006505 2.3e-165 586.3 511 61.8
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 3.8e-165 585.5 496 63.3
THA.LOC104813432 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 3.8e-165 585.5 494 64.0
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 1.9e-164 583.2 499 62.9
MBI03_g18682_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D006505 1.0e-162 577.4 491 63.1
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 1.5e-161 573.5 504 60.9
SGA_v2.0_scaffold77G25279 Striga asiatica HOM05D004980 ORTHO05D006505 7.5e-161 571.2 527 59.6
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 1.3e-160 570.5 497 61.6
Aqoxy1G02957 Aquilegia oxysepala HOM05D004980 ORTHO05D006505 1.1e-159 567.4 522 59.4
SGA_v2.0_scaffold95G28711 Striga asiatica HOM05D004980 ORTHO05D006505 3.2e-159 565.8 489 62.6
unitig_61.g26342 Utricularia gibba HOM05D004980 ORTHO05D006505 7.8e-158 561.2 497 60.8
Actinidia32274 Actinidia chinensis HOM05D004980 ORTHO05D006505 3.7e-152 542.3 442 65.2
SalBow3G0070 Salvia bowleyana HOM05D004980 ORTHO05D006505 9.2e-151 537.7 496 58.1
ATR1128G016 Amborella trichopoda HOM05D004980 ORTHO05D006505 2.0e-150 536.6 492 60.2
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 4.6e-150 535.4 513 58.7
HPP92_015364 Vanilla planifolia HOM05D004980 ORTHO05D006505 1.9e-148 530.0 490 59.2
HPP92_015323 Vanilla planifolia HOM05D004980 ORTHO05D006505 4.0e-146 522.3 497 58.4
CSS0031886 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 6.0e-134 481.9 499 55.9
SEGI_15101 Sequoiadendron giganteum HOM05D004980 ORTHO05D006505 1.9e-132 476.9 508 52.6
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 3.5e-126 456.1 495 53.9
Zm00001eb188720 Zea mays HOM05D004980 ORTHO05D006505 8.7e-125 451.4 424 57.1
PGSC0003DMG400028768 Solanum tuberosum HOM05D004980 ORTHO05D006505 4.3e-124 449.1 287 75.6
Hma1.2p1_1332F.1_g276080 Hydrangea macrophylla HOM05D004980 ORTHO05D006505 1.7e-120 437.2 505 52.9
Gohir.1Z049437 Gossypium hirsutum HOM05D004980 ORTHO05D006505 1.3e-117 427.6 270 77.4
Os02g0804600 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 5.1e-117 425.6 525 46.5
AagrBONN_evm.TU.Sc2ySwM_368.2510 Anthoceros agrestis HOM05D004980 ORTHO05D006505 2.8e-115 419.9 501 47.3
Mapoly0013s0163 Marchantia polymorpha HOM05D004980 ORTHO05D006505 1.2e-113 414.5 501 48.9
Pp3c19_6530 Physcomitrium patens HOM05D004980 ORTHO05D006505 9.9e-113 411.4 488 47.5
Zm00001eb375420 Zea mays HOM05D004980 ORTHO05D006505 1.0e-109 401.4 307 64.8
Zm00001eb074840 Zea mays HOM05D004980 ORTHO05D006505 2.1e-107 393.7 498 45.2
SMO347G0194 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 1.5e-105 387.5 429 48.3
Nitab4.5_0002826g0110 Nicotiana tabacum HOM05D004980 ORTHO05D006505 5.8e-105 385.6 333 63.1
Nitab4.5_0000328g0140 Nicotiana tabacum HOM05D004980 ORTHO05D006505 2.2e-104 383.6 333 63.1
VMungo0647G1280 Vigna mungo HOM05D004980 ORTHO05D006505 1.9e-100 370.5 321 63.2
Actinidia14067 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.9e-95 354.0 308 61.0
SMO235G0013 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 1.3e-91 341.3 482 41.7
CDE02G3733 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 2.2e-91 340.5 290 62.1
CBR_g19046 Chara braunii HOM05D004980 ORTHO05D006505 4.5e-89 332.8 520 39.6
Lj1A365T16 Lonicera japonica HOM05D004980 ORTHO05D006505 6.1e-86 322.4 290 61.4
Lj1A365T17 Lonicera japonica HOM05D004980 ORTHO05D006505 2.7e-78 297.0 215 70.2
Actinidia02889 Actinidia chinensis HOM05D004980 ORTHO05D006505 5.0e-72 276.2 163 80.4
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 1.5e-71 274.6 381 41.5
MCO02G238 Micromonas commoda HOM05D004980 ORTHO05D006505 1.5e-68 264.6 439 37.6
Glyma.14G020732 Glycine max HOM05D004980 ORTHO05D006505 4.8e-67 259.6 183 69.9
Cre09.g402034 Chlamydomonas reinhardtii HOM05D004980 ORTHO05D006505 6.8e-61 239.2 525 32.4
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 2.0e-60 237.7 169 67.5
Cfa026714 Carpinus fangiana HOM05D004980 ORTHO05D006505 4.0e-53 213.4 509 33.2
PRCOL_00001455 Prasinoderma coloniale HOM05D004980 ORTHO05D006505 2.0e-52 211.1 429 34.0
CAN.G1099.1 Capsicum annuum HOM05D004980 ORTHO05D006505 4.4e-52 209.9 182 58.8
Os02g0525400 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 1.3e-43 181.8 255 46.7
CDE06G0656 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 1.8e-37 161.4 164 52.4
CAN.G631.2 Capsicum annuum HOM05D004980 ORTHO05D043407 1.5e-31 141.7 131 53.4
Psat6g174400 Pisum sativum HOM05D004980 ORTHO05D322940 1.2e-25 122.1 88 70.5
Haze_27588 Corylus avellana HOM05D004980 ORTHO05D163887 5.1e-24 116.7 180 37.8
MBI14_g13658_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D030039 3.2e-18 97.4 64 75.0
CAN.G699.10 Capsicum annuum HOM05D004980 ORTHO05D043407 1.6e-14 85.1 72 56.9
MBI18_g30544_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D028395 1.8e-13 81.6 56 71.4
CAN.G1376.1 Capsicum annuum HOM05D004980 ORTHO05D021411 3.1e-13 80.9 79 53.2
MBI15_g15732_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D243769 3.1e-13 80.9 52 75.0
Psat4g144240 Pisum sativum HOM05D001541 ORTHO05D001465 1.1e-10 72.4 54 63.0
Actinidia02888 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.9e-10 71.6 177 35.6
SEGI_30719 Sequoiadendron giganteum HOM05D004980 ORTHO05D384019 7.3e-07 59.7 99 38.4
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.6e-06 58.5 97 34.0
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.6e-06 58.5 97 33.0
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 2.8e-06 57.8 97 34.0
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 3.6e-06 57.4 97 33.0
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 8.1e-06 56.2 117 32.5


User provided reference genes

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