Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.1e-93 346.7 187 100.0
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 1.1e-91 340.1 187 98.4
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.1e-91 340.1 187 98.4
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.8e-91 339.3 187 98.4
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 1.3e-84 316.6 184 94.0
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 8.2e-68 260.8 190 79.5
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.4e-67 260.0 187 78.6
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 1.5e-64 250.0 180 78.9
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 3.7e-60 235.3 181 73.5
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 4.8e-60 235.0 190 72.1
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.1e-59 233.8 180 73.3
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.6e-58 229.9 182 69.2
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.6e-58 229.9 187 70.6
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 7.7e-58 227.6 185 72.4
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.7e-57 226.5 173 74.0
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 3.8e-57 225.3 175 73.7
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 3.8e-57 225.3 187 69.0
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 8.5e-57 224.2 191 69.6
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 1.5e-56 223.4 180 68.3
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 3.2e-56 222.2 180 72.2
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 4.2e-56 221.9 180 68.9
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 4.2e-56 221.9 174 70.1
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 4.2e-56 221.9 174 70.1
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 7.2e-56 221.1 174 72.4
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.2e-55 220.3 193 66.8
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 1.6e-55 219.9 175 70.3
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 2.1e-55 219.5 168 73.8
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.7e-55 219.2 190 67.4
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 3.6e-55 218.8 171 71.3
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 4.7e-55 218.4 174 70.1
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.0e-54 217.2 180 68.3
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.0e-54 217.2 193 66.8
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 1.8e-54 216.5 172 72.7
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.8e-54 216.5 180 69.4
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 4.0e-54 215.3 188 66.0
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 5.2e-54 214.9 185 67.6
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 5.2e-54 214.9 173 69.4
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 5.7e-53 211.5 141 80.9
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 5.7e-53 211.5 190 68.9
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 7.5e-53 211.1 194 64.9
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 1.3e-52 210.3 189 67.2
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 3.7e-52 208.8 190 68.4
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 6.3e-52 208.0 185 70.3
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 1.1e-51 207.2 180 72.8
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 7.0e-51 204.5 173 70.5
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 1.2e-50 203.8 179 70.4
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.0e-50 203.0 149 75.2
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 3.5e-50 202.2 172 69.8
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 3.5e-50 202.2 176 68.2
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 4.5e-50 201.8 184 64.1
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 7.7e-50 201.1 186 65.1
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.0e-49 200.7 172 69.8
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.0e-49 200.7 172 69.8
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 6.5e-49 198.0 175 67.4
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.1e-48 197.2 197 64.5
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 9.4e-48 194.1 158 69.0
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.2e-47 193.7 193 62.2
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.1e-47 193.0 173 66.5
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 2.7e-47 192.6 168 66.1
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.6e-47 192.2 193 62.2
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 4.7e-47 191.8 200 61.0
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 4.7e-47 191.8 200 61.0
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 4.7e-47 191.8 185 65.9
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 6.1e-47 191.4 180 65.6
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 6.1e-47 191.4 190 63.2
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 1.8e-46 189.9 202 61.9
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 1.8e-46 189.9 188 66.0
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 3.0e-46 189.1 187 57.8
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 4.0e-46 188.7 187 63.6
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 8.8e-46 187.6 186 60.8
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 8.8e-46 187.6 188 62.2
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 8.8e-46 187.6 188 62.2
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 1.5e-45 186.8 182 63.2
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.5e-45 186.8 184 60.9
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 2.0e-45 186.4 186 62.9
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 2.6e-45 186.0 194 61.3
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 2.6e-45 186.0 197 61.4
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 4.4e-45 185.3 191 63.4
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 4.4e-45 185.3 194 60.8
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 9.8e-45 184.1 186 60.2
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.3e-44 183.7 223 55.2
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.3e-44 183.7 182 63.2
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.7e-44 183.3 177 62.1
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 2.8e-44 182.6 191 62.8
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 3.7e-44 182.2 189 63.5
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 3.7e-44 182.2 173 66.5
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.9e-44 181.8 129 76.7
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 6.3e-44 181.4 180 61.1
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 8.3e-44 181.0 187 61.0
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.1e-43 180.6 205 59.0
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 1.4e-43 180.3 192 58.9
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.4e-43 180.3 175 61.7
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 1.4e-43 180.3 180 60.6
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.8e-43 179.9 191 62.3
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 5.4e-43 178.3 186 59.1
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 5.4e-43 178.3 172 62.2
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 1.2e-42 177.2 186 58.1
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 2.0e-42 176.4 170 61.2
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 3.5e-42 175.6 180 59.4
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 7.7e-42 174.5 182 59.3
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.3e-41 173.7 189 62.4
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 2.5e-40 169.5 115 77.4
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 2.5e-40 169.5 115 77.4
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.5e-40 169.5 115 77.4
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 1.2e-39 167.2 114 78.9
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 2.8e-39 166.0 130 70.0
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 3.6e-39 165.6 118 78.8
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 2.6e-37 159.5 268 44.4
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 2.4e-35 152.9 174 55.7
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 5.6e-32 141.7 180 54.4
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 8.9e-30 134.4 118 66.1
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.5e-29 133.7 125 63.2
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 2.2e-28 129.8 175 49.1
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 3.7e-28 129.0 177 48.6
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 3.7e-28 129.0 116 60.3
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 6.4e-28 128.3 129 58.1
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 4.1e-27 125.6 148 58.1
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 7.0e-27 124.8 354 33.9
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 2.0e-26 123.2 182 48.9
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 2.1e-23 113.2 106 58.5
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 8.1e-23 111.3 114 58.8
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 6.8e-22 108.2 77 70.1
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 2.3e-17 93.2 78 62.8
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 3.9e-17 92.4 109 56.0
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 7.3e-16 88.2 107 51.4
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.6e-15 85.9 66 69.7
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 2.9e-12 76.3 91 48.4
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 2.3e-09 66.6 113 46.9
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 6.6e-09 65.1 53 67.9
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 1.9e-08 63.5 80 50.0


User provided reference genes

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