Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.7e-188 661.4 330 100.0
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.7e-170 602.1 330 93.0
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.3e-169 599.7 330 91.8
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.4e-157 558.1 330 88.2
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.8e-134 483.0 331 72.8
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 8.3e-132 474.2 328 72.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 4.0e-126 455.3 330 70.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 9.2e-123 444.1 327 69.1
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 1.2e-117 427.2 325 67.7
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.5e-117 426.8 327 66.1
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.6e-117 426.0 323 65.6
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 7.6e-117 424.5 325 66.5
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.6e-117 424.5 323 65.0
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.7e-116 423.3 328 64.3
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.9e-116 422.5 322 66.1
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.9e-116 422.5 325 64.3
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.1e-115 420.6 322 66.1
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.4e-115 420.2 325 64.0
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.9e-115 419.9 323 66.3
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.6e-114 416.8 347 62.0
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 3.5e-114 415.6 324 64.5
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 4.6e-114 415.2 323 64.7
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 6.0e-114 414.8 325 62.8
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 7.8e-114 414.5 322 65.2
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.3e-113 412.9 322 64.6
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 3.9e-113 412.1 320 63.1
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.1e-113 411.8 326 62.9
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.1e-112 410.6 324 63.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.5e-112 410.2 333 63.4
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.5e-112 410.2 328 64.0
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 5.6e-112 408.3 322 64.3
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 9.6e-112 407.5 324 64.2
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.3e-111 407.1 322 64.3
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.6e-111 405.6 321 61.7
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 6.2e-111 404.8 331 63.1
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.1e-110 404.1 326 62.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.1e-110 402.5 324 62.7
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 5.3e-110 401.7 327 60.9
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 5.3e-110 401.7 322 64.6
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 9.0e-110 401.0 326 61.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 9.0e-110 401.0 330 61.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.2e-109 400.6 322 60.6
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.0e-109 399.8 317 61.8
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 7.6e-109 397.9 323 63.2
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 9.9e-109 397.5 324 60.8
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.2e-108 396.4 324 62.3
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.9e-108 396.0 327 62.7
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 3.8e-108 395.6 290 70.7
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.4e-107 393.7 322 61.2
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.9e-107 393.3 375 55.7
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 3.5e-106 389.0 335 59.1
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 6.0e-106 388.3 330 60.6
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 6.0e-106 388.3 330 60.6
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 6.0e-106 388.3 324 63.0
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 6.0e-106 388.3 324 60.5
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.5e-104 383.6 321 62.9
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.9e-104 383.3 282 66.7
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 3.3e-104 382.5 325 59.4
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 4.3e-104 382.1 296 62.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 5.6e-104 381.7 325 60.3
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.3e-103 380.6 324 59.6
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 4.8e-103 378.6 317 62.1
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 6.2e-103 378.3 330 57.0
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 6.2e-103 378.3 289 63.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.1e-102 377.5 317 62.1
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 2.4e-102 376.3 324 58.0
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 3.4e-101 372.5 331 58.6
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 5.8e-101 371.7 321 58.6
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 5.8e-101 371.7 342 56.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 7.6e-101 371.3 342 56.4
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.2e-100 369.8 330 57.6
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 6.5e-100 368.2 312 59.9
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 8.4e-100 367.9 302 62.6
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.2e-99 365.9 293 60.4
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 4.2e-99 365.5 289 62.3
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 4.6e-98 362.1 289 60.9
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 7.9e-98 361.3 338 54.7
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.0e-97 359.4 322 56.2
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 3.9e-97 359.0 293 60.8
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 6.2e-95 351.7 326 55.8
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 5.3e-94 348.6 322 55.6
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 4.5e-93 345.5 328 55.8
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.3e-92 344.0 326 54.3
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 5.0e-92 342.0 321 56.4
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.4e-92 341.3 324 56.8
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.9e-91 340.1 292 59.2
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 3.2e-91 339.3 330 54.5
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 7.1e-91 338.2 323 55.4
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 3.5e-90 335.9 328 54.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.3e-89 333.2 323 55.4
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 8.7e-89 331.3 321 54.8
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 8.7e-89 331.3 321 55.8
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.1e-88 330.9 321 55.5
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.1e-88 330.9 321 55.5
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.5e-88 330.5 321 55.5
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 2.5e-88 329.7 321 55.1
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 4.3e-88 328.9 325 53.5
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 7.4e-88 328.2 321 54.8
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 7.4e-88 328.2 321 54.8
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.2e-87 326.6 328 53.4
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.7e-87 325.9 321 54.2
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 3.7e-87 325.9 335 50.4
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 4.8e-87 325.5 321 54.8
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 6.3e-87 325.1 321 54.8
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.1e-86 322.4 255 64.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 5.3e-86 322.0 289 56.7
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 6.9e-86 321.6 264 59.5
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.3e-84 317.4 232 69.4
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 3.8e-84 315.8 255 63.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.0e-84 315.5 248 64.9
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.4e-83 313.9 294 55.4
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.1e-82 310.1 289 56.4
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 6.1e-82 308.5 292 54.5
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.8e-81 304.7 206 79.1
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 4.3e-80 302.4 234 64.5
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.3e-79 300.8 261 61.3
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 9.1e-78 294.7 277 54.9
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 5.1e-73 278.9 290 49.7
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 8.8e-73 278.1 282 51.4
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 3.1e-70 269.6 343 43.7
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 5.9e-69 265.4 330 45.8
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.5e-64 250.8 332 41.6
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.2e-63 246.9 155 78.7
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 2.7e-53 213.4 213 52.1
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 2.2e-52 210.3 209 59.3
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 4.4e-48 196.1 113 84.1
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.4e-48 196.1 184 55.4
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.7e-39 167.5 296 38.5
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.9e-37 159.1 108 66.7
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 3.7e-23 113.2 112 50.9
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.9e-11 74.3 68 57.4
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 2.5e-11 73.9 287 26.8


User provided reference genes

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