Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.9e-193 676.8 345 100.0
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-169 599.7 331 94.3
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-165 586.3 383 82.8
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 3.9e-164 581.6 315 94.9
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.4e-161 572.4 315 93.3
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.9e-132 475.3 317 79.5
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 3.4e-128 462.2 313 75.7
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 4.2e-110 402.1 316 68.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.6e-109 400.2 319 66.8
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.2e-108 395.2 322 64.9
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.7e-108 394.8 299 67.6
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.8e-106 389.4 317 64.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.7e-106 389.0 322 63.7
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 4.5e-104 382.1 316 61.1
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.0e-103 380.9 316 60.8
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.3e-103 380.6 314 62.1
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 2.2e-103 379.8 296 66.6
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.2e-103 379.8 320 63.1
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.5e-103 377.9 322 62.1
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.5e-102 377.1 316 60.4
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 4.2e-102 375.6 297 65.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.7e-101 372.1 296 62.8
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 4.0e-100 369.0 281 68.7
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 8.2e-98 361.3 301 62.5
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 8.2e-98 361.3 318 59.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.4e-97 359.8 322 59.3
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 5.3e-97 358.6 281 65.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 7.0e-97 358.2 323 60.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 9.1e-97 357.8 326 59.2
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 9.1e-97 357.8 315 61.0
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.6e-96 357.1 324 60.2
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 7.7e-96 354.8 308 60.4
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 7.7e-96 354.8 322 58.7
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.0e-95 354.4 307 61.9
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.2e-95 353.2 323 59.4
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.9e-95 352.8 312 60.9
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 3.8e-95 352.4 319 60.5
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.1e-94 350.9 321 57.9
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 9.4e-94 347.8 291 63.6
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.2e-93 347.4 310 60.6
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.6e-93 347.1 274 66.8
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.6e-93 347.1 318 56.3
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.1e-93 346.7 313 57.2
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 6.1e-93 345.1 378 52.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 6.1e-93 345.1 313 56.9
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.4e-92 344.0 316 56.3
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.4e-92 344.0 311 58.5
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.3e-92 343.2 324 58.3
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 3.0e-92 342.8 318 58.5
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 6.8e-92 341.7 310 58.4
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.2e-91 340.9 324 55.9
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 4.4e-91 339.0 348 56.3
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.8e-90 336.3 320 56.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 4.8e-90 335.5 319 55.5
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 4.8e-90 335.5 319 55.5
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 4.8e-90 335.5 319 55.5
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 6.3e-90 335.1 284 60.6
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 6.3e-90 335.1 324 56.5
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 8.3e-90 334.7 291 59.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.4e-89 333.2 323 54.5
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.0e-89 331.6 323 55.4
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 9.1e-89 331.3 319 55.2
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 9.1e-89 331.3 319 55.2
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 9.1e-89 331.3 320 54.4
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 3.5e-88 329.3 314 55.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 3.5e-88 329.3 318 54.7
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.5e-88 328.9 315 54.9
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 4.5e-88 328.9 324 55.6
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.9e-88 328.6 321 54.2
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 7.7e-88 328.2 318 54.1
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 7.7e-88 328.2 317 54.3
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.0e-87 327.8 317 53.9
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-87 327.4 320 54.7
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-87 327.4 320 54.7
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.7e-87 327.0 320 54.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.7e-87 327.0 320 54.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.7e-87 327.0 320 54.7
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.2e-87 326.6 320 54.7
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 3.8e-87 325.9 320 55.0
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.8e-87 325.9 320 55.0
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.0e-87 325.5 320 54.1
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-86 324.3 316 54.4
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.1e-86 324.3 320 53.8
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.5e-86 323.9 312 55.1
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-86 323.6 320 55.0
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.9e-86 323.6 319 52.7
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 4.2e-86 322.4 289 58.5
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.2e-86 322.4 316 56.6
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.5e-86 322.0 319 52.4
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 5.5e-86 322.0 317 53.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.2e-85 320.9 314 54.8
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.2e-85 320.9 326 54.3
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.1e-85 320.1 313 54.0
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 2.8e-85 319.7 318 53.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 3.6e-85 319.3 316 51.6
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-84 317.4 318 53.5
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.4e-84 317.4 318 55.0
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.4e-84 317.4 314 51.6
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.8e-84 317.0 320 53.4
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 8.8e-84 314.7 315 54.6
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 8.8e-84 314.7 326 54.6
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.2e-83 314.3 316 51.6
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.5e-83 313.9 323 54.2
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.4e-83 312.8 312 54.2
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.3e-82 310.8 315 54.3
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.7e-82 310.5 328 53.4
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.8e-82 309.7 314 52.5
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 6.3e-82 308.5 321 53.6
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 2.4e-81 306.6 313 53.0
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.4e-81 306.6 321 54.2
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.4e-81 306.6 285 56.5
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 7.0e-81 305.1 377 49.3
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.2e-80 304.3 323 51.4
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.0e-80 303.5 317 53.0
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 7.8e-80 301.6 312 51.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.0e-79 301.2 317 53.6
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.0e-79 301.2 254 63.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.1e-78 297.7 313 52.4
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.9e-78 297.0 313 49.5
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.6e-77 292.7 322 49.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.7e-77 292.4 276 57.6
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.7e-77 292.4 257 58.0
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 3.0e-76 289.7 260 57.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 8.9e-76 288.1 336 49.7
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.2e-75 287.7 257 57.2
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.6e-75 286.6 318 49.4
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 3.7e-74 282.7 431 41.8
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.7e-74 282.7 323 49.8
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.9e-70 270.4 319 46.4
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 6.2e-69 265.4 323 47.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 8.0e-69 265.0 164 82.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.5e-67 260.8 293 46.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.4e-67 259.6 224 60.7
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.4e-67 259.6 320 43.8
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.9e-66 256.5 325 44.3
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 8.3e-66 255.0 329 46.2
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 2.7e-64 250.0 170 78.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 3.0e-63 246.5 322 46.3
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.0e-48 195.7 215 51.6
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.5e-46 191.0 247 42.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-43 181.4 87 100.0
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-43 181.4 87 100.0
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.0e-40 169.1 101 85.1
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 4.3e-38 162.9 164 53.7
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 6.9e-36 155.6 303 34.0
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 2.2e-34 150.6 336 32.1
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.0e-31 140.2 135 51.9
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 5.1e-31 139.4 315 29.8
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.7e-31 138.7 135 51.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.1e-30 138.3 181 45.3
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 3.1e-28 130.2 312 32.1
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.6e-27 127.1 115 57.4
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 8.4e-26 122.1 99 61.6
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.3e-22 110.2 88 59.1
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.1e-21 107.5 105 52.4
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 4.2e-17 93.2 69 60.9
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 4.2e-17 93.2 69 60.9
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 4.2e-17 93.2 69 60.9
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 7.9e-16 89.0 69 59.4
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 2.8e-13 80.5 142 40.8
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.1e-09 68.6 96 34.4


User provided reference genes

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