Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 9.7e-98 360.1 182 100.0
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 9.7e-98 360.1 182 100.0
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 7.7e-95 350.5 182 96.7
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 8.5e-94 347.1 182 95.6
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 1.0e-86 323.6 182 89.0
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 2.9e-86 322.0 182 89.0
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 5.0e-86 321.2 182 89.6
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 8.3e-73 277.3 184 77.7
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 1.4e-72 276.6 182 75.8
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 1.0e-70 270.4 185 76.2
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 1.7e-70 269.6 184 74.5
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 3.8e-70 268.5 183 77.6
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 4.2e-69 265.0 182 73.1
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 5.5e-69 264.6 183 75.4
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 5.5e-69 264.6 184 75.0
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 2.1e-68 262.7 183 74.9
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 2.7e-68 262.3 184 73.9
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 2.7e-68 262.3 184 76.6
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 2.7e-68 262.3 182 75.3
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 3.6e-68 261.9 183 74.9
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 4.7e-68 261.5 183 74.3
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.4e-67 260.0 182 72.0
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.8e-67 259.6 182 72.0
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 1.8e-67 259.6 183 73.8
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.8e-67 259.6 182 74.7
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 6.8e-67 257.7 183 73.2
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 8.8e-67 257.3 186 72.6
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 2.6e-66 255.8 182 72.0
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 7.5e-66 254.2 166 77.1
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 9.8e-66 253.8 185 71.4
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 1.7e-65 253.1 185 71.9
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 6.3e-65 251.1 183 72.7
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 6.3e-65 251.1 182 72.5
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 1.1e-64 250.4 182 72.0
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 2.4e-64 249.2 182 71.4
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 3.1e-64 248.8 182 71.4
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 3.1e-64 248.8 183 71.0
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 3.1e-64 248.8 182 71.4
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 4.1e-64 248.4 183 70.5
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 5.4e-64 248.1 182 71.4
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 5.4e-64 248.1 182 72.0
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 7.0e-64 247.7 182 72.0
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 7.0e-64 247.7 182 70.3
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 9.2e-64 247.3 182 69.8
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 3.5e-63 245.4 182 70.3
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.1e-61 240.4 182 69.2
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 1.9e-61 239.6 187 69.5
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 2.5e-61 239.2 184 70.7
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 3.3e-61 238.8 182 69.8
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 3.3e-61 238.8 182 71.4
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 7.3e-61 237.7 184 69.0
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 9.5e-61 237.3 182 70.9
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 2.8e-60 235.7 158 75.9
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 3.6e-60 235.3 182 70.3
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 6.1e-60 234.6 182 68.7
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 1.4e-59 233.4 183 71.0
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 1.8e-59 233.0 183 68.3
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 4.0e-59 231.9 184 65.8
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 6.8e-59 231.1 182 67.6
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 8.9e-59 230.7 157 74.5
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 3.4e-58 228.8 152 75.0
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 9.8e-58 227.3 185 65.9
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 2.9e-57 225.7 182 67.0
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 2.9e-57 225.7 182 67.0
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 2.9e-57 225.7 186 65.1
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 2.9e-57 225.7 183 67.2
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 3.7e-57 225.3 183 64.5
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 4.9e-57 224.9 189 65.1
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 8.3e-57 224.2 183 68.3
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 1.1e-56 223.8 182 65.9
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 1.1e-56 223.8 181 64.1
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 5.4e-56 221.5 182 67.0
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 9.2e-56 220.7 172 67.4
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 3.5e-55 218.8 145 76.6
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 4.6e-55 218.4 182 64.3
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 1.3e-54 216.9 183 65.6
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.0e-54 215.7 182 63.2
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 5.0e-54 214.9 201 58.2
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 1.5e-53 213.4 182 62.6
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 1.9e-53 213.0 116 87.9
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 7.3e-53 211.1 146 70.5
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 2.8e-52 209.1 152 65.8
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 4.7e-52 208.4 114 86.8
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 1.0e-51 207.2 115 84.3
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 1.4e-51 206.8 179 66.5
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 2.3e-51 206.1 132 76.5
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 6.8e-51 204.5 162 64.2
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 8.9e-51 204.1 182 63.7
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 1.5e-50 203.4 116 85.3
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 3.4e-50 202.2 184 58.7
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 3.4e-50 202.2 179 59.8
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 9.8e-50 200.7 182 62.1
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 1.7e-49 199.9 159 62.9
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 2.2e-49 199.5 156 64.1
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 2.2e-49 199.5 178 58.4
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 2.2e-49 199.5 183 59.0
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 6.4e-49 198.0 158 62.0
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 6.4e-49 198.0 163 62.0
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 1.4e-48 196.8 151 66.2
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 1.9e-48 196.4 115 81.7
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 1.9e-48 196.4 156 62.8
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 1.9e-48 196.4 155 66.5
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 2.4e-48 196.1 156 62.8
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 2.4e-48 196.1 183 57.4
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 3.2e-48 195.7 181 57.5
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 5.4e-48 194.9 158 62.7
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 5.4e-48 194.9 184 56.0
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 7.0e-48 194.5 157 61.1
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 1.6e-47 193.4 162 61.1
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 2.7e-47 192.6 154 61.0
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 7.8e-47 191.0 184 56.5
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 1.3e-46 190.3 103 96.1
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 3.0e-46 189.1 151 62.3
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 5.0e-46 188.3 151 62.9
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 4.4e-42 175.3 110 72.7
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 4.9e-41 171.8 124 66.1
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 8.3e-41 171.0 115 71.3
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.6e-39 166.8 149 55.7
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 1.9e-37 159.8 117 61.5
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 4.7e-36 155.2 112 60.7
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 3.4e-34 149.1 106 62.3
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 4.4e-34 148.7 108 62.0
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 5.8e-34 148.3 125 61.6
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.3e-25 120.6 170 45.3
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 9.6e-21 104.4 59 79.7
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 9.6e-21 104.4 59 79.7
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 3.4e-18 95.9 108 56.5
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 2.2e-17 93.2 68 70.6
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 1.5e-13 80.5 45 86.7


User provided reference genes

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