Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 9.4e-42 173.3 102 99.0
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 9.4e-42 173.3 102 100.0
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 9.4e-42 173.3 102 99.0
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 1.5e-39 166.0 102 96.1
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.0e-39 165.6 102 82.4
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 7.5e-39 163.7 97 99.0
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 2.2e-38 162.2 102 76.5
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 2.2e-38 162.2 102 78.4
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 2.2e-38 162.2 102 78.4
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 2.8e-38 161.8 102 76.5
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 4.8e-38 161.0 104 82.7
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 4.8e-38 161.0 102 81.4
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 4.8e-38 161.0 102 85.3
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 4.8e-38 161.0 102 75.5
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 1.8e-37 159.1 102 80.4
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 2.4e-37 158.7 101 76.2
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 3.1e-37 158.3 102 85.3
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 3.1e-37 158.3 103 86.4
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 4.1e-37 157.9 102 77.5
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 4.1e-37 157.9 102 77.5
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 7.0e-37 157.1 101 88.1
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 7.0e-37 157.1 104 86.5
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 9.1e-37 156.8 102 78.4
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 9.1e-37 156.8 103 86.4
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 1.2e-36 156.4 102 77.5
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 2.0e-36 155.6 103 78.6
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 3.5e-36 154.8 103 79.6
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 5.9e-36 154.1 102 76.5
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 5.9e-36 154.1 104 78.8
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 7.7e-36 153.7 96 84.4
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 7.7e-36 153.7 103 75.7
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 1.0e-35 153.3 108 79.6
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 1.7e-35 152.5 102 76.5
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.7e-35 152.5 103 78.6
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.2e-35 152.1 96 80.2
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 5.0e-35 151.0 101 75.2
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 5.0e-35 151.0 106 88.7
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 5.0e-35 151.0 101 77.2
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 6.5e-35 150.6 95 88.4
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 8.5e-35 150.2 96 76.0
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 8.5e-35 150.2 103 78.6
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 8.5e-35 150.2 103 80.6
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 1.5e-34 149.4 112 77.7
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 1.5e-34 149.4 95 77.9
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 1.5e-34 149.4 95 77.9
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 1.5e-34 149.4 110 77.3
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 1.9e-34 149.1 101 81.2
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.5e-34 148.7 103 72.8
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 7.2e-34 147.1 94 83.0
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 7.2e-34 147.1 101 84.2
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 1.6e-33 146.0 101 72.3
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 2.7e-33 145.2 112 67.9
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 2.7e-33 145.2 112 67.9
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 3.6e-33 144.8 102 77.5
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 8.0e-33 143.7 107 73.8
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 8.0e-33 143.7 101 80.2
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 1.0e-32 143.3 108 77.8
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 1.4e-32 142.9 111 77.5
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 1.4e-32 142.9 101 74.3
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 4.0e-32 141.4 111 76.6
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 4.0e-32 141.4 96 77.1
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 5.2e-32 141.0 94 84.0
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 6.8e-32 140.6 107 68.2
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 8.8e-32 140.2 111 79.3
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 8.8e-32 140.2 103 74.8
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 2.6e-31 138.7 103 83.5
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 2.6e-31 138.7 103 83.5
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 2.6e-31 138.7 114 72.8
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 3.4e-31 138.3 107 78.5
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 5.7e-31 137.5 89 94.4
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 5.7e-31 137.5 103 70.9
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 7.5e-31 137.1 100 78.0
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 9.8e-31 136.7 105 67.6
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 1.3e-30 136.3 113 66.4
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 1.7e-30 136.0 105 68.6
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 1.7e-30 136.0 109 77.1
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 3.7e-30 134.8 115 71.3
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 4.8e-30 134.4 113 71.7
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 4.8e-30 134.4 113 71.7
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 6.3e-30 134.0 114 71.1
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 1.1e-29 133.3 91 73.6
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 1.4e-29 132.9 98 68.4
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 1.4e-29 132.9 109 66.1
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 3.1e-29 131.7 106 71.7
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 3.1e-29 131.7 109 66.1
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 1.6e-28 129.4 106 74.5
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 2.0e-28 129.0 105 68.6
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 7.7e-28 127.1 89 82.0
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 1.3e-27 126.3 107 70.1
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 1.7e-27 125.9 116 61.2
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 2.9e-27 125.2 107 71.0
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 2.9e-27 125.2 107 71.0
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 2.9e-27 125.2 64 93.8
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 8.6e-27 123.6 109 76.1
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 1.5e-26 122.9 101 65.3
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 1.9e-26 122.5 112 71.4
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 2.5e-26 122.1 114 71.9
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 2.5e-26 122.1 78 98.7
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 3.3e-26 121.7 101 58.4
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 4.2e-26 121.3 85 72.9
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 9.5e-26 120.2 101 70.3
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 1.2e-25 119.8 86 75.6
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 1.6e-25 119.4 114 67.5
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 6.1e-25 117.5 106 67.9
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 1.8e-24 115.9 108 71.3
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 8.9e-24 113.6 112 64.3
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 2.0e-23 112.5 112 67.9
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 2.2e-22 109.0 63 82.5
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 2.3e-19 99.0 103 59.2
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 1.9e-18 95.9 64 78.1
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 9.5e-18 93.6 58 75.9
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 1.3e-14 83.2 70 78.6
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 3.7e-14 81.6 82 61.0
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.4e-13 79.0 94 50.0
Mapoly0043s0020 Marchantia polymorpha HOM05D006768 ORTHO05D008436 4.1e-13 78.2 115 52.2
Pp3c13_12030 Physcomitrium patens HOM05D006768 ORTHO05D008436 3.9e-11 71.6 101 51.5
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 2.5e-10 68.9 100 49.0
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 9.5e-10 67.0 57 66.7
SMO308G0024 Selaginella moellendorffii HOM05D006768 ORTHO05D008436 2.8e-09 65.5 103 52.4
DCAR_014111 Daucus carota HOM05D006768 ORTHO05D008436 1.1e-08 63.5 55 83.6
Nn1g08704 Nelumbo nucifera HOM05D006768 ORTHO05D008436 1.1e-08 63.5 50 76.0


User provided reference genes

Program Settings