Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-75 286.6 147 100.0
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 1.8e-73 279.3 148 97.3
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.2e-68 262.3 148 92.6
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 6.3e-55 217.6 154 77.9
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.1e-40 170.2 146 68.5
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 5.3e-38 161.4 146 61.6
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 8.8e-33 144.1 148 54.7
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 2.0e-32 142.9 146 56.8
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.3e-31 140.2 146 56.2
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 2.8e-31 139.0 143 54.5
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 2.8e-31 139.0 146 54.8
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.4e-30 136.7 143 53.8
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.4e-30 136.0 138 54.3
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.6e-29 133.3 142 49.3
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.7e-29 132.5 138 53.6
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 2.7e-29 132.5 138 53.6
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.3e-28 130.2 146 52.1
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 2.2e-28 129.4 126 55.6
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 2.9e-28 129.0 136 52.2
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 3.8e-28 128.6 127 57.5
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.0e-28 128.3 166 48.8
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 8.5e-28 127.5 142 51.4
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 3.2e-27 125.6 150 50.0
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 3.2e-27 125.6 161 50.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 5.5e-27 124.8 164 45.1
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 9.4e-27 124.0 161 46.6
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.2e-26 123.6 147 49.0
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 4.7e-26 121.7 148 49.3
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 8.0e-26 120.9 137 48.9
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 8.0e-26 120.9 135 48.9
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.8e-25 119.8 131 46.6
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.0e-25 119.0 110 51.8
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 4.0e-25 118.6 124 50.8
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 5.2e-25 118.2 132 50.0
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 8.8e-25 117.5 122 47.5
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.2e-24 117.1 148 48.0
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 1.5e-24 116.7 131 50.4
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.0e-24 116.3 147 47.6
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.6e-24 115.9 126 47.6
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.6e-24 115.9 126 47.6
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.7e-24 114.8 139 58.3
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 5.7e-24 114.8 138 44.9
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 7.5e-24 114.4 155 49.0
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 7.5e-24 114.4 156 49.4
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.2e-23 112.8 137 48.9
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 2.8e-23 112.5 127 55.1
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 6.3e-23 111.3 149 45.6
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.1e-22 110.5 130 46.2
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.4e-22 110.2 142 43.7
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.4e-22 109.4 150 44.7
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 2.4e-22 109.4 130 48.5
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 3.1e-22 109.0 146 43.2
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 4.1e-22 108.6 110 50.0
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 5.4e-22 108.2 139 44.6
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 5.4e-22 108.2 137 46.0
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.2e-21 107.1 132 42.4
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.2e-21 107.1 144 43.1
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 1.2e-21 107.1 124 45.2
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.6e-21 106.7 114 50.9
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 1.6e-21 106.7 135 45.9
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 1.6e-21 106.7 109 48.6
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 3.5e-21 105.5 114 50.0
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 3.5e-21 105.5 139 45.3
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 3.5e-21 105.5 109 50.5
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 7.7e-21 104.4 110 47.3
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 2.3e-20 102.8 156 42.3
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.3e-20 102.8 156 42.3
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.3e-20 102.8 109 49.5
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.3e-20 102.8 138 41.3
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 5.0e-20 101.7 152 40.1
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 5.0e-20 101.7 135 44.4
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 5.0e-20 101.7 145 40.7
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 5.0e-20 101.7 139 42.4
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 1.5e-19 100.1 107 49.5
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.5e-19 100.1 143 41.3
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.5e-19 99.4 145 40.0
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 4.2e-19 98.6 109 49.5
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 5.5e-19 98.2 151 42.4
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.2e-18 97.1 156 39.7
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.6e-18 96.7 140 40.7
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 2.8e-18 95.9 146 35.6
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 2.8e-18 95.9 160 37.5
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 3.6e-18 95.5 128 42.2
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 4.7e-18 95.1 140 40.7
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 5.2e-17 91.7 115 45.2
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 1.2e-16 90.5 137 40.9
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 4.4e-16 88.6 148 38.5
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 5.7e-16 88.2 132 40.2
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 2.8e-15 85.9 149 34.2
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 3.7e-15 85.5 101 45.5
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 6.3e-15 84.7 46 91.3
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 1.1e-14 84.0 124 38.7
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 7.8e-13 77.8 52 75.0
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 1.0e-12 77.4 135 34.8
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.7e-12 76.6 90 41.1
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 2.3e-12 76.3 118 37.3
FvH4_2g10341 Fragaria vesca HOM05D005386 ORTHO05D006981 3.8e-12 75.5 62 71.0
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.9e-11 73.2 99 42.4
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.6e-10 68.9 144 36.1
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 8.0e-10 67.8 135 33.3
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.4e-09 67.0 108 31.5
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 6.8e-09 64.7 111 35.1
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.5e-08 63.5 117 30.8
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 3.7e-07 58.9 130 29.2
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.4e-06 57.0 117 33.3
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 3.2e-06 55.8 146 30.8
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.4e-06 55.1 73 38.4


User provided reference genes

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