Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.3e-175 619.8 338 100.0
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 5.9e-173 610.9 338 99.4
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.6e-170 602.8 338 94.7
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 7.7e-165 583.9 338 92.0
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 7.4e-152 540.8 338 82.5
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 7.7e-133 477.6 339 80.2
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 8.2e-50 201.8 409 39.4
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 3.1e-49 199.9 383 38.4
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 5.0e-47 192.6 387 37.7
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.0e-40 170.6 265 42.6
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 3.3e-35 153.3 376 33.0
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 3.3e-35 153.3 387 34.9
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 3.7e-34 149.8 404 33.7
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 5.0e-31 139.4 420 32.1
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 5.2e-28 129.4 390 30.8
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 6.7e-28 129.0 390 30.5
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 8.8e-28 128.6 241 36.9
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 1.5e-27 127.9 371 32.3
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 4.4e-27 126.3 263 35.4
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 9.7e-27 125.2 379 30.3
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 1.3e-26 124.8 258 39.5
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 1.7e-26 124.4 392 30.1
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 8.2e-26 122.1 276 37.0
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 1.8e-25 120.9 320 33.8
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 4.1e-25 119.8 332 30.4
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 2.0e-24 117.5 278 36.3
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 5.9e-24 115.9 413 29.8
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 7.7e-24 115.5 276 34.8
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 1.0e-23 115.2 180 44.4
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 1.3e-23 114.8 262 34.4
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 1.7e-23 114.4 199 41.2
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 5.0e-23 112.8 246 35.8
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 1.1e-22 111.7 182 42.9
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.5e-22 111.3 184 42.9
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 1.9e-22 110.9 199 39.7
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 1.9e-22 110.9 235 38.3
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 3.2e-22 110.2 194 42.3
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 3.2e-22 110.2 261 36.8
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 4.2e-22 109.8 380 31.1
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 7.2e-22 109.0 378 28.8
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 7.2e-22 109.0 272 33.5
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 1.0e-20 105.1 241 35.7
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 1.4e-20 104.8 170 46.5
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.8e-20 104.4 385 29.1
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 6.8e-20 102.4 377 29.7
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 8.8e-20 102.1 341 31.7
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 1.2e-19 101.7 263 35.0
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 1.5e-19 101.3 369 30.4
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 2.6e-19 100.5 228 37.3
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 3.7e-18 96.7 196 42.3
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 4.8e-18 96.3 251 35.5
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 1.1e-17 95.1 128 45.3
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 3.1e-17 93.6 343 30.6
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 5.4e-17 92.8 183 37.2
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 7.7e-16 89.0 187 38.5
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 1.3e-15 88.2 92 54.3
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 6.5e-15 85.9 183 39.9
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 8.6e-15 85.5 190 37.9
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 8.6e-15 85.5 172 38.4
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 1.1e-14 85.1 173 37.0
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 1.5e-14 84.7 173 35.3
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 1.9e-14 84.3 182 37.4
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 1.9e-14 84.3 187 36.9
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 5.5e-14 82.8 190 37.4
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 6.1e-13 79.3 194 36.6
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 8.0e-13 79.0 334 26.3
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.0e-12 78.6 192 35.9
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 3.0e-12 77.0 186 33.9
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 6.8e-12 75.9 197 33.0
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 6.8e-12 75.9 193 36.3
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 9.8e-11 72.0 261 30.3
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 1.3e-10 71.6 88 53.4
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 1.3e-10 71.6 193 34.7
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 2.8e-10 70.5 193 34.2
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 4.9e-10 69.7 186 36.0
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 3.1e-09 67.0 192 33.3
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 1.2e-08 65.1 119 41.2
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 3.5e-08 63.5 145 36.6
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 4.5e-08 63.2 116 41.4
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 2.9e-07 60.5 190 31.1
HPP92_022826 Vanilla planifolia HOM05D002733 ORTHO05D010023 3.3e-06 57.0 84 44.0
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 4.3e-06 56.6 155 34.2


User provided reference genes

Program Settings