Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.7e-308 1060.1 529 100.0
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 2.6e-204 715.7 367 99.2
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.0e-199 699.5 367 97.3
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 3.2e-186 655.6 369 91.1
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 5.2e-184 648.3 369 90.2
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 3.0e-163 579.3 360 83.1
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 8.9e-160 567.8 363 79.6
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.5e-159 567.0 361 79.5
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 8.6e-155 551.2 361 77.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.5e-154 550.4 361 77.3
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 2.5e-154 549.7 360 76.4
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.1e-152 544.3 363 76.6
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 3.1e-152 542.7 360 74.7
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.2e-151 540.8 365 74.8
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 5.4e-149 531.9 362 73.8
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 3.0e-147 526.2 358 75.1
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.5e-146 523.1 386 70.2
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 9.5e-146 521.2 375 70.4
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.2e-145 520.8 363 70.2
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 2.1e-145 520.0 361 71.5
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.6e-145 519.2 328 79.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 3.6e-145 519.2 330 79.4
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 8.1e-145 518.1 365 72.3
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.4e-144 517.3 358 74.3
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.4e-144 517.3 363 73.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 2.4e-144 516.5 363 71.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 3.1e-144 516.2 361 70.4
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 3.1e-144 516.2 361 70.4
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 3.1e-144 516.2 361 70.9
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.1e-144 516.2 358 70.4
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 5.2e-144 515.4 361 70.9
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 5.2e-144 515.4 361 72.0
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 6.8e-144 515.0 358 71.2
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.0e-143 513.5 360 69.2
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 2.6e-143 513.1 360 70.0
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 4.4e-143 512.3 358 70.7
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.4e-143 512.3 363 69.7
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.9e-143 511.1 372 70.7
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.3e-142 510.8 361 70.4
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.7e-142 510.4 358 70.7
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 2.2e-142 510.0 361 69.3
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.2e-142 510.0 368 69.3
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.9e-142 509.6 368 69.6
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 3.8e-142 509.2 360 71.7
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 4.9e-142 508.8 357 72.0
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.1e-141 507.7 383 68.4
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.9e-141 506.9 357 70.6
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.9e-141 506.9 373 68.6
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 4.1e-141 505.8 361 71.5
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 7.1e-141 505.0 363 69.7
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.2e-140 504.2 363 68.9
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.6e-140 503.8 328 75.0
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.6e-140 503.8 363 69.7
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.1e-140 503.4 362 70.7
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 4.6e-140 502.3 371 68.2
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 7.8e-140 501.5 364 70.6
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.7e-139 500.4 366 70.5
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 5.1e-139 498.8 360 70.3
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.1e-138 497.7 357 69.5
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.5e-138 497.3 362 70.2
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.3e-138 495.7 352 70.2
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 9.6e-138 494.6 361 68.7
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.1e-137 493.4 363 68.3
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 2.8e-137 493.0 363 68.0
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.1e-136 491.1 415 63.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 4.0e-136 489.2 361 69.5
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.2e-135 487.6 361 67.6
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 2.0e-135 486.9 365 70.7
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 9.3e-133 478.0 327 71.9
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.7e-131 473.8 365 66.6
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 3.0e-131 473.0 435 59.8
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 2.5e-130 469.9 360 67.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 3.1e-128 463.0 355 65.4
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.2e-127 461.1 361 66.8
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 4.5e-127 459.1 281 79.0
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.2e-126 456.8 364 65.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 4.9e-126 455.7 358 64.5
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.5e-124 449.5 351 65.2
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.5e-122 444.1 300 73.3
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 3.7e-121 439.5 366 65.0
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 6.2e-121 438.7 344 68.0
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 9.0e-120 434.9 357 66.4
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.7e-118 430.6 264 78.0
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.2e-116 424.5 338 64.5
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.1e-113 413.7 362 61.0
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 4.8e-113 412.5 265 80.0
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 7.6e-111 405.2 265 80.0
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.4e-109 401.0 360 59.4
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 6.0e-108 395.6 335 61.5
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.3e-107 393.7 265 75.5
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 6.7e-107 392.1 271 73.8
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.5e-106 390.2 268 76.5
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 4.3e-106 389.4 264 76.5
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 6.3e-105 385.6 332 56.6
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.8e-104 384.0 298 64.1
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 2.0e-103 380.6 265 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.5e-103 379.4 337 57.6
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 5.1e-99 365.9 261 71.6
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.1e-98 364.8 280 65.0
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.8e-96 357.5 262 68.7
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 9.1e-96 355.1 260 70.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.6e-92 343.2 207 83.1
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 3.3e-90 336.7 383 49.1
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 6.3e-89 332.4 311 55.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 4.4e-82 309.7 186 83.9
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.0e-79 300.8 349 47.6
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 2.2e-73 280.8 344 46.8
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 8.8e-67 258.8 212 60.4
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 8.0e-60 235.7 438 36.3
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 9.5e-53 212.2 217 53.9
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.8e-51 206.1 110 96.4
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.0e-50 204.5 215 51.6
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 9.8e-50 202.2 149 73.8
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.3e-49 201.8 379 36.1
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.9e-48 198.0 146 69.2
FAN06G0908 Fragaria x ananassa HOM05D003589 ORTHO05D013325 3.9e-46 190.3 114 85.1
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.7e-44 183.3 117 81.2
FAN12G1450 Fragaria x ananassa HOM05D003589 ORTHO05D013325 8.6e-38 162.5 97 85.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.9e-37 161.4 150 58.0
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.1e-35 155.6 331 30.5
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 7.5e-34 149.4 149 52.3
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-31 142.1 138 58.0
FAN06G3204 Fragaria x ananassa HOM05D003589 ORTHO05D013325 6.0e-31 139.8 85 80.0
FAN03G0179 Fragaria x ananassa HOM05D003589 ORTHO05D013325 6.6e-30 136.3 81 81.5
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.1e-29 135.6 116 58.6
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.6e-28 131.7 96 62.5
FAN14G1543 Fragaria x ananassa HOM05D000564 ORTHO05D004145 1.3e-25 122.1 124 57.3
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 4.9e-25 120.2 310 31.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 4.2e-24 117.1 75 77.3
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 6.0e-23 113.2 73 76.7
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.0e-22 112.5 81 67.9
FvH4_4g21291 Fragaria vesca HOM05D000385 ORTHO05D000269 1.3e-22 112.1 58 91.4
FAN06G1139 Fragaria x ananassa HOM05D000564 ORTHO05D201902 1.7e-22 111.7 100 61.0
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.0e-22 110.9 77 74.0
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 9.6e-21 105.9 99 60.6
FAN24G1084 Fragaria x ananassa HOM05D003589 ORTHO05D199069 1.6e-20 105.1 66 78.8
FAN24G1563 Fragaria x ananassa HOM05D000564 ORTHO05D013325 4.8e-20 103.6 58 87.9
FAN20G0220 Fragaria x ananassa HOM05D003102 ORTHO05D003118 9.0e-19 99.4 71 69.0
FAN06G0001 Fragaria x ananassa HOM05D003589 ORTHO05D200389 3.4e-18 97.4 54 83.3
FAN24G0702 Fragaria x ananassa HOM05D003102 ORTHO05D013325 9.9e-18 95.9 89 58.4
FvH4_4g08552 Fragaria vesca HOM05D015361 ORTHO05D013325 2.2e-17 94.7 59 78.0
FAN01G2665 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.2e-17 94.7 58 86.2
FAN10G1877 Fragaria x ananassa HOM05D003589 ORTHO05D013325 8.4e-17 92.8 80 65.0
FAN12G3323 Fragaria x ananassa HOM05D003589 ORTHO05D201308 8.4e-17 92.8 61 77.0
FAN22G1792 Fragaria x ananassa HOM05D000564 ORTHO05D001690 2.4e-16 91.3 116 44.8
FAN19G1981 Fragaria x ananassa HOM05D003589 ORTHO05D013325 3.2e-16 90.9 56 85.7
FAN19G0584 Fragaria x ananassa HOM05D003589 ORTHO05D017962 4.2e-16 90.5 107 45.8
FAN01G2228 Fragaria x ananassa HOM05D003589 ORTHO05D013325 9.3e-16 89.4 56 83.9
FAN23G0341 Fragaria x ananassa HOM05D003589 ORTHO05D017962 2.1e-15 88.2 85 54.1
FAN24G2938 Fragaria x ananassa HOM05D003589 ORTHO05D013325 2.7e-15 87.8 57 77.2
FAN11G1012 Fragaria x ananassa HOM05D003589 ORTHO05D013325 3.5e-15 87.4 56 78.6
FAN27G1285 Fragaria x ananassa HOM05D015361 ORTHO05D206459 3.5e-15 87.4 52 80.8
FAN13G0234 Fragaria x ananassa HOM05D003589 ORTHO05D017962 4.6e-15 87.0 87 50.6
FAN21G2041 Fragaria x ananassa HOM05D003589 ORTHO05D013325 4.6e-15 87.0 57 77.2
FAN26G2091 Fragaria x ananassa HOM05D003589 ORTHO05D013325 4.6e-15 87.0 72 61.1
FAN03G2839 Fragaria x ananassa HOM05D003589 ORTHO05D013325 2.8e-12 77.8 98 49.0
FAN14G1722 Fragaria x ananassa HOM05D011194 ORTHO05D004145 4.0e-11 73.9 65 58.5
FAN17G2856 Fragaria x ananassa HOM05D010215 ORTHO05D206029 5.8e-10 70.1 106 45.3
FAN28G2161 Fragaria x ananassa HOM05D003102 ORTHO05D001690 7.6e-10 69.7 68 57.4
FAN18G0189 Fragaria x ananassa HOM05D012510 ORTHO05D013879 2.9e-09 67.8 39 82.1
FAN04G1547 Fragaria x ananassa HOM05D003589 ORTHO05D017962 3.8e-09 67.4 84 47.6
FAN18G0828 Fragaria x ananassa HOM05D000564 ORTHO05D209614 4.9e-09 67.0 89 46.1
FAN08G3407 Fragaria x ananassa HOM05D003102 ORTHO05D009683 6.4e-09 66.6 50 70.0
FAN08G2060 Fragaria x ananassa HOM05D003589 ORTHO05D210104 1.4e-08 65.5 57 54.4
FAN02G3044 Fragaria x ananassa HOM05D000564 ORTHO05D001690 2.4e-08 64.7 126 37.3
FAN16G2450 Fragaria x ananassa HOM05D015361 ORTHO05D203906 3.2e-08 64.3 43 69.8
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 5.4e-08 63.5 111 34.2
FAN05G1830 Fragaria x ananassa HOM05D010215 ORTHO05D020660 9.3e-08 62.8 68 52.9
FvH4_6g28331 Fragaria vesca HOM05D000564 ORTHO05D001690 1.2e-07 62.4 62 50.0
FAN09G0611 Fragaria x ananassa HOM05D009757 ORTHO05D005239 2.1e-07 61.6 81 43.2
FAN02G3166 Fragaria x ananassa HOM05D010215 ORTHO05D200301 6.0e-07 60.1 71 49.3
FvH4_5g38271 Fragaria vesca HOM05D009757 ORTHO05D013325 7.9e-07 59.7 54 59.3
FAN01G0495 Fragaria x ananassa HOM05D003589 ORTHO05D013325 7.9e-07 59.7 57 56.1
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 7.9e-07 59.7 33 87.9
FvH4_3g29832 Fragaria vesca HOM05D003589 ORTHO05D022585 1.8e-06 58.5 37 75.7
FAN07G2058 Fragaria x ananassa HOM05D003102 ORTHO05D210317 2.3e-06 58.2 46 63.0
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 2.3e-06 58.2 127 28.3
FAN15G1119 Fragaria x ananassa HOM05D000514 ORTHO05D008963 3.0e-06 57.8 65 53.8
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 3.9e-06 57.4 178 28.1
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 6.7e-06 56.6 187 29.4
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 8.7e-06 56.2 141 27.7
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 8.7e-06 56.2 123 27.6


User provided reference genes

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