Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.8e-142 509.2 254 100.0
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.1e-119 432.6 217 98.6
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-116 423.7 234 91.5
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 6.5e-116 421.0 230 93.0
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 9.3e-115 417.2 230 91.3
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.1e-114 416.0 230 91.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.1e-111 406.0 270 78.5
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 4.1e-110 401.7 228 87.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 7.9e-106 387.5 228 84.6
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.0e-105 387.1 228 85.5
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 4.6e-98 361.7 217 82.9
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 6.3e-95 351.3 203 83.3
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 6.9e-94 347.8 227 77.1
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 1.2e-93 347.1 229 75.1
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.3e-92 343.6 228 77.2
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 5.5e-91 338.2 219 76.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.6e-90 336.7 226 74.8
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 3.6e-90 335.5 226 73.5
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.7e-90 335.1 226 73.5
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 6.1e-90 334.7 226 74.8
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 7.9e-90 334.3 226 73.5
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.8e-89 333.2 230 72.2
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 2.3e-89 332.8 230 72.6
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 3.0e-89 332.4 234 73.5
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 8.8e-89 330.9 227 72.2
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.1e-88 330.5 226 74.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 2.0e-88 329.7 226 74.3
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.0e-88 329.7 218 77.1
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 3.3e-88 328.9 276 64.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 5.7e-88 328.2 230 72.2
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 7.4e-88 327.8 230 71.7
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 9.7e-88 327.4 215 74.9
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 9.7e-88 327.4 218 75.2
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 9.7e-88 327.4 227 71.4
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 9.7e-88 327.4 227 70.9
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.7e-87 326.6 217 76.0
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 6.3e-87 324.7 227 69.2
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 6.3e-87 324.7 230 70.9
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 8.2e-87 324.3 215 74.4
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-86 323.6 229 68.6
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-86 323.2 226 69.0
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.4e-86 322.8 220 69.5
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 2.4e-86 322.8 226 72.1
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 4.1e-86 322.0 235 66.8
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 5.3e-86 321.6 226 69.5
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 9.1e-86 320.9 226 68.6
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 9.1e-86 320.9 226 72.1
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.1e-86 320.9 226 68.6
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.1e-86 320.9 227 68.7
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 9.1e-86 320.9 230 71.3
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 9.1e-86 320.9 226 69.0
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.2e-85 320.5 220 69.1
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.2e-85 320.5 226 72.1
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.6e-85 320.1 226 70.4
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 2.0e-85 319.7 226 69.5
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.0e-85 319.7 226 69.5
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-85 319.3 229 67.7
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.5e-85 318.9 226 69.5
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 3.5e-85 318.9 226 67.3
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 4.5e-85 318.5 223 71.3
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.5e-85 318.5 226 69.0
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.5e-85 318.5 220 69.1
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 5.9e-85 318.2 226 68.1
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.9e-85 318.2 230 70.4
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 5.9e-85 318.2 227 68.3
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 7.7e-85 317.8 236 67.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 7.7e-85 317.8 217 73.7
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.0e-84 317.4 230 70.9
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.9e-84 315.8 227 69.6
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 5.0e-84 315.1 230 69.6
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 8.5e-84 314.3 227 69.2
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 8.5e-84 314.3 230 68.7
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-83 313.9 223 67.3
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.1e-83 313.9 223 67.3
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.1e-83 313.9 221 71.0
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-83 313.5 223 67.3
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.5e-83 312.8 213 72.3
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 4.2e-83 312.0 226 67.7
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.5e-83 311.6 217 77.0
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.2e-82 310.5 213 72.3
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.6e-82 310.1 217 69.1
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 6.1e-82 308.1 226 71.2
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 8.0e-82 307.8 226 67.7
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 8.0e-82 307.8 230 67.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.0e-81 307.4 230 67.0
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.0e-81 307.4 213 71.8
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.0e-81 307.4 226 67.3
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.4e-81 307.0 223 67.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.8e-81 306.6 215 68.4
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.8e-81 306.6 223 67.3
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.3e-81 306.2 226 68.6
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.3e-81 306.2 226 68.6
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 2.3e-81 306.2 226 68.1
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 3.0e-81 305.8 219 69.9
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 3.0e-81 305.8 219 69.9
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 5.2e-81 305.1 240 64.6
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 5.2e-81 305.1 213 70.0
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 5.2e-81 305.1 213 70.0
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 3.3e-80 302.4 223 66.8
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.3e-80 302.4 206 70.4
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 9.7e-80 300.8 227 67.0
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.3e-79 300.4 214 70.1
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 2.8e-79 299.3 223 65.9
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 2.8e-79 299.3 223 68.2
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.8e-79 299.3 212 69.8
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 6.3e-79 298.1 226 65.9
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 6.3e-79 298.1 226 66.8
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-78 296.6 204 68.6
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.4e-78 296.2 202 69.8
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 5.3e-78 295.0 233 67.0
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 9.1e-78 294.3 201 69.2
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.0e-77 293.1 206 70.4
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 5.9e-77 291.6 226 64.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.7e-77 291.2 217 67.7
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.7e-76 290.0 208 67.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 3.8e-76 288.9 221 62.9
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 5.0e-76 288.5 203 68.5
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 6.5e-76 288.1 207 67.1
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 6.5e-76 288.1 207 67.1
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 6.5e-76 288.1 204 68.6
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.5e-75 287.0 212 67.0
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 7.2e-75 284.6 211 68.7
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 6.1e-74 281.6 210 68.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 8.8e-73 277.7 228 63.6
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.3e-71 273.9 202 66.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.7e-71 273.5 211 64.5
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.8e-71 272.7 213 64.3
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.0e-68 264.2 186 71.5
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.3e-68 263.8 195 66.7
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 6.5e-68 261.5 198 64.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 8.5e-68 261.2 216 61.6
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 3.2e-67 259.2 212 61.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 2.1e-66 256.5 220 60.0
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 3.6e-66 255.8 182 68.1
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 8.0e-66 254.6 202 61.4
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.3e-65 253.1 212 60.8
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.0e-65 252.3 216 62.5
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.2e-63 246.5 226 60.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 5.4e-62 241.9 177 68.4
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.9e-60 236.1 223 57.8
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 1.2e-56 224.2 207 55.6
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.6e-56 223.0 214 57.0
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.6e-56 223.0 230 53.0
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 3.7e-55 219.2 158 67.7
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 4.1e-54 215.7 158 67.1
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.6e-53 213.8 211 53.1
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.5e-53 212.6 216 56.0
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.3e-52 210.7 212 54.7
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.0e-52 209.5 146 69.9
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 9.5e-51 204.5 128 76.6
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.2e-50 204.1 221 50.7
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.6e-50 202.6 212 53.3
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 8.9e-49 198.0 218 50.0
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.7e-45 186.4 185 55.1
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 6.0e-45 185.3 211 46.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.0e-44 183.0 159 63.5
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.2e-40 171.0 237 43.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.4e-38 163.3 238 44.1
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.2e-37 161.0 103 69.9
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.0e-36 157.9 113 67.3
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 9.5e-35 151.4 238 41.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 3.1e-33 146.4 181 48.6
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-31 139.0 107 68.2
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 4.9e-31 139.0 155 45.2
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 3.9e-28 129.4 82 74.4
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 5.6e-27 125.6 94 68.1
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 4.7e-26 122.5 83 73.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-23 114.4 105 61.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 5.4e-22 109.0 63 81.0
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.0e-20 104.8 157 36.9
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.2e-14 83.2 69 60.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 2.5e-11 73.6 202 27.7
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.8e-10 69.3 108 38.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.3e-07 61.2 40 62.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.7e-07 60.8 72 51.4
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 5.5e-06 55.8 71 42.3


User provided reference genes

Program Settings