Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3351 Fragaria x ananassa HOM05D004492 ORTHO05D005602 6.7e-251 870.2 423 100.0
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 7.1e-168 594.3 482 67.2
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 2.9e-145 519.2 483 58.2
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 5.5e-128 461.8 476 53.6
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.8e-123 446.8 477 51.4
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 7.0e-123 444.9 477 50.9
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 1.8e-115 420.2 473 50.1
FAN27G1826 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.0e-114 416.8 344 67.2
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 1.1e-112 411.0 475 47.8
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 5.5e-112 408.7 468 48.7
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 4.7e-111 405.6 477 46.3
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 4.7e-111 405.6 477 46.3
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 5.2e-110 402.1 473 45.2
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 1.5e-109 400.6 484 46.1
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 1.7e-108 397.1 472 44.5
Thecc.08G118700 Theobroma cacao HOM05D004492 ORTHO05D005602 8.2e-108 394.8 475 44.8
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 4.1e-107 392.5 473 45.0
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 2.7e-106 389.8 472 45.6
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 1.1e-104 384.4 474 45.1
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 1.5e-104 384.0 478 44.4
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 3.2e-104 382.9 473 44.8
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 2.7e-103 379.8 474 44.5
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 5.2e-102 375.6 475 42.1
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 2.0e-101 373.6 474 44.3
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 4.4e-101 372.5 481 44.5
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 1.3e-100 370.9 474 45.1
arahy.Tifrunner.gnm1.ann1.Y35QAD Arachis hypogaea HOM05D004492 ORTHO05D005602 4.1e-99 365.9 463 43.6
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 7.0e-99 365.2 489 42.5
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 2.0e-98 363.6 476 42.0
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 4.5e-98 362.5 473 42.9
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 5.9e-98 362.1 506 41.1
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 7.7e-98 361.7 472 41.7
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 1.0e-97 361.3 477 42.8
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 1.7e-97 360.5 475 42.1
THA.LOC104813139 Tarenaya hassleriana HOM05D004492 ORTHO05D005602 2.9e-97 359.8 468 42.5
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 5.0e-97 359.0 479 42.4
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 1.5e-96 357.5 474 42.8
AUR62004708 Chenopodium quinoa HOM05D004492 ORTHO05D005602 1.9e-96 357.1 418 44.7
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 2.5e-96 356.7 475 41.9
PSO170G3797 Papaver somniferum HOM05D004492 ORTHO05D005602 2.5e-96 356.7 471 41.2
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 7.2e-96 355.1 473 42.3
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 9.5e-96 354.8 468 42.9
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 1.2e-95 354.4 471 42.3
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 1.2e-95 354.4 474 42.2
arahy.Tifrunner.gnm1.ann1.WF7TJ5 Arachis hypogaea HOM05D004492 ORTHO05D005602 1.6e-95 354.0 494 42.3
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 1.2e-93 347.8 477 43.4
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 2.0e-93 347.1 489 41.7
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 2.6e-93 346.7 435 43.0
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 3.4e-93 346.3 472 41.1
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 3.4e-93 346.3 475 41.7
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 3.4e-93 346.3 476 42.0
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 1.3e-92 344.4 477 42.6
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 1.7e-92 344.0 473 42.7
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 2.8e-92 343.2 474 40.9
Cfa015974 Carpinus fangiana HOM05D004492 ORTHO05D005602 6.3e-92 342.0 490 40.2
Aa31LG9G14390 Aethionema arabicum HOM05D004492 ORTHO05D005602 8.3e-92 341.7 473 40.2
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 1.4e-91 340.9 474 42.0
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 5.4e-91 339.0 477 40.7
Nitab4.5_0004882g0030 Nicotiana tabacum HOM05D004492 ORTHO05D005602 1.2e-90 337.8 475 40.8
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 1.6e-90 337.4 473 39.5
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 5.9e-90 335.5 438 45.0
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 1.7e-89 334.0 511 40.1
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 2.3e-89 333.6 442 41.9
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 3.8e-89 332.8 485 41.2
FvH4_2g26270 Fragaria vesca HOM05D004492 ORTHO05D005602 1.9e-88 330.5 246 71.5
Sp3g31340 Schrenkiella parvula HOM05D004492 ORTHO05D005602 3.3e-88 329.7 473 40.0
BraA07t28100Z Brassica rapa HOM05D004492 ORTHO05D005602 4.3e-88 329.3 473 40.0
AL3G50940 Arabidopsis lyrata HOM05D004492 ORTHO05D005602 7.3e-88 328.6 473 39.1
A07p03030 Brassica napus HOM05D004492 ORTHO05D005602 1.2e-87 327.8 473 39.3
AT2G17900 Arabidopsis thaliana HOM05D004492 ORTHO05D005602 1.6e-87 327.4 473 38.9
Carub.0003s3205 Capsella rubella HOM05D004492 ORTHO05D005602 2.1e-87 327.0 473 39.7
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 2.1e-87 327.0 487 39.0
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 2.1e-87 327.0 523 38.0
Gohir.A02G074300 Gossypium hirsutum HOM05D004492 ORTHO05D005602 4.7e-87 325.9 341 49.0
Thhalv10022664m.g Eutrema salsugineum HOM05D004492 ORTHO05D005602 6.1e-87 325.5 472 39.0
EL10Ac1g00021 Beta vulgaris HOM05D004492 ORTHO05D005602 1.8e-86 323.9 473 39.5
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 4.0e-86 322.8 476 38.9
BcaB03g16570 Brassica carinata HOM05D004492 ORTHO05D005602 5.2e-86 322.4 476 38.2
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 5.2e-86 322.4 353 47.6
BcaC06g36340 Brassica carinata HOM05D004492 ORTHO05D005602 1.5e-85 320.9 473 39.3
C07p05160 Brassica napus HOM05D004492 ORTHO05D005602 2.0e-85 320.5 474 39.2
BolC7t40914H Brassica oleracea HOM05D004492 ORTHO05D005602 2.0e-85 320.5 474 39.2
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 2.6e-85 320.1 550 35.8
SGA_v2.0_scaffold52G19008 Striga asiatica HOM05D004492 ORTHO05D005602 4.4e-85 319.3 466 40.1
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 5.8e-85 318.9 477 38.6
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 1.7e-84 317.4 474 38.8
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 1.2e-82 311.2 499 37.9
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 1.6e-82 310.8 569 35.7
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 1.0e-81 308.1 468 39.5
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 1.4e-78 297.7 363 46.3
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 2.6e-77 293.5 474 37.3
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 3.2e-75 286.6 470 36.6
COL.COLO4_38232 Corchorus olitorius HOM05D004492 ORTHO05D005602 7.5e-69 265.4 443 38.4
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 4.1e-67 259.6 343 39.7
CARHR108400 Cardamine hirsuta HOM05D004492 ORTHO05D005602 1.0e-65 255.0 242 49.2
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 2.4e-62 243.8 362 40.6
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 2.4e-62 243.8 362 40.6
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 5.8e-61 239.2 419 36.0
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 5.4e-59 232.6 477 31.4
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 2.1e-58 230.7 471 32.9
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 3.5e-58 229.9 481 31.0
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 6.0e-58 229.2 486 30.9
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 3.9e-57 226.5 466 32.2
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 7.3e-56 222.2 475 30.5
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 1.1e-54 218.4 360 38.3
SMO116G0295 Selaginella moellendorffii HOM05D004492 ORTHO05D005602 1.8e-54 217.6 474 29.5
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 9.0e-54 215.3 470 29.8
FvH4_2g03790 Fragaria vesca HOM05D000030 ORTHO05D000009 2.6e-53 213.8 225 51.6
Hma1.2p1_0038F.1_g023990 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 2.6e-53 213.8 336 39.6
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 2.2e-52 210.7 483 30.0
Migut.C01176 Erythranthe guttata HOM05D004492 ORTHO05D005602 1.2e-50 204.9 405 34.8
FvH4_2g03781 Fragaria vesca HOM05D004492 ORTHO05D005602 1.3e-41 174.9 142 64.1
AUR62023625 Chenopodium quinoa HOM05D004492 ORTHO05D005602 1.4e-38 164.9 425 31.3
Cc10_g10540 Coffea canephora HOM05D004492 ORTHO05D005602 5.8e-37 159.5 148 50.7
Hund27046 Selenicereus undatus HOM05D004492 ORTHO05D005602 5.8e-37 159.5 464 28.9
Hma1.2p1_0038F.1_g023980 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 1.3e-36 158.3 219 41.6
FvH4_2g26271 Fragaria vesca HOM05D004492 ORTHO05D005602 7.1e-35 152.5 155 56.8
FAN15G0234 Fragaria x ananassa HOM05D004492 ORTHO05D005602 4.6e-34 149.8 257 40.1
Os03g0704200 Oryza sativa ssp. japonica HOM05D004492 ORTHO05D005602 2.5e-32 144.1 145 45.5
Lj7C323T6 Lonicera japonica HOM05D004492 ORTHO05D005602 3.3e-32 143.7 201 42.3
Glyma.06G109667 Glycine max HOM05D004492 ORTHO05D005602 5.6e-32 142.9 128 57.0
SHI09394 Sapria himalayana HOM05D004492 ORTHO05D000001 2.1e-31 141.0 263 34.2
CBR_g16883 Chara braunii HOM05D004492 ORTHO05D001303 1.7e-28 131.3 259 29.3
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 2.9e-28 130.6 290 29.0
Cc10_g10520 Coffea canephora HOM05D004492 ORTHO05D005602 2.6e-21 107.5 173 37.0
SHI09395 Sapria himalayana HOM05D004492 ORTHO05D000001 1.6e-18 98.2 111 43.2
SEGI_04710 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 6.1e-18 96.3 109 44.0
FAN15G1996 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.7e-15 88.2 66 63.6
Glyma.06G109733 Glycine max HOM05D004492 ORTHO05D005602 2.4e-14 84.3 93 46.2
Cc10_g10530 Coffea canephora HOM05D004492 ORTHO05D005602 4.1e-14 83.6 84 52.4
Thecc.08G118800 Theobroma cacao HOM05D004492 ORTHO05D005602 5.3e-14 83.2 100 43.0
Lj7A312G16 Lonicera japonica HOM05D004492 ORTHO05D005602 9.1e-14 82.4 160 33.8
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 3.4e-13 80.5 96 44.8
MCO04G092 Micromonas commoda HOM05D004492 ORTHO05D005602 3.2e-11 73.9 239 23.8
Zm00001eb393760 Zea mays HOM05D004492 ORTHO05D005602 9.4e-11 72.4 223 26.5
Mapoly0082s0074 Marchantia polymorpha HOM05D004492 ORTHO05D030137 1.0e-09 68.9 271 24.4
MCO14G073 Micromonas commoda HOM05D004492 ORTHO05D005602 3.9e-09 67.0 262 22.5
Pp3c11_23530 Physcomitrium patens HOM05D004492 ORTHO05D030137 6.7e-09 66.2 248 23.4
CARHR110080 Cardamine hirsuta HOM05D006673 ORTHO05D008458 2.0e-08 64.7 259 23.6
SEGI_10642 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 2.0e-08 64.7 65 44.6
PGSC0003DMG400017176 Solanum tuberosum HOM05D006673 ORTHO05D008458 2.6e-08 64.3 256 23.8
SEGI_20195 Sequoiadendron giganteum HOM05D004492 ORTHO05D030137 2.2e-07 61.2 254 21.7
Sopen09g032940 Solanum pennellii HOM05D006673 ORTHO05D008458 2.2e-07 61.2 256 23.8
Solyc09g090030.2 Solanum lycopersicum HOM05D006673 ORTHO05D008458 2.8e-07 60.8 256 23.8
THA.LOC104820538 Tarenaya hassleriana HOM05D006673 ORTHO05D008458 2.8e-07 60.8 251 26.7
Aa31LG8G16640 Aethionema arabicum HOM05D006673 ORTHO05D008458 3.7e-07 60.5 260 23.5
Cfa024297 Carpinus fangiana HOM05D004492 ORTHO05D005602 4.8e-07 60.1 271 24.7
CAN.G793.53 Capsicum annuum HOM05D006673 ORTHO05D008458 6.3e-07 59.7 274 23.4
SalBow2G2533 Salvia bowleyana HOM05D006673 ORTHO05D008458 8.2e-07 59.3 230 22.2
Carub.0003s3394 Capsella rubella HOM05D006673 ORTHO05D008458 1.4e-06 58.5 263 24.0
Cpa.g.sc23.41 Carica papaya HOM05D000344 ORTHO05D000934 1.8e-06 58.2 75 38.7
SMO367G0641 Selaginella moellendorffii HOM05D004492 ORTHO05D030137 2.4e-06 57.8 43 58.1
AT2G19640 Arabidopsis thaliana HOM05D006673 ORTHO05D008458 3.1e-06 57.4 272 23.9
HPP92_003450 Vanilla planifolia HOM05D006673 ORTHO05D008458 4.1e-06 57.0 242 24.8
BcaB06g29210 Brassica carinata HOM05D004492 ORTHO05D005602 9.1e-06 55.8 51 54.9
BcaNung02846 Brassica carinata HOM05D004492 ORTHO05D005602 9.1e-06 55.8 51 54.9
Psat6g087440 Pisum sativum HOM05D006673 ORTHO05D008458 9.1e-06 55.8 224 25.0


User provided reference genes

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