Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.3e-265 918.3 458 100.0
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.2e-240 836.3 442 95.5
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 7.5e-240 833.6 441 95.5
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.2e-234 816.2 442 93.4
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.2e-224 783.1 438 90.0
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 1.3e-210 736.5 436 83.7
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 2.1e-210 735.7 435 83.4
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 3.2e-206 721.8 426 83.1
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 4.6e-197 691.4 444 77.3
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.1e-195 686.8 437 77.6
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 3.7e-194 681.8 434 77.0
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.1e-193 680.2 442 75.8
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 4.0e-193 678.3 442 75.1
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 9.0e-193 677.2 437 75.5
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.0e-192 676.0 437 75.5
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.6e-192 675.6 439 76.5
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 2.5e-190 669.1 442 74.7
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 9.3e-190 667.2 444 74.3
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 9.3e-190 667.2 442 74.2
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-189 666.8 434 74.9
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 2.7e-189 665.6 444 73.9
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 6.0e-189 664.5 439 74.3
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.5e-187 659.8 436 75.0
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 5.7e-187 657.9 443 74.0
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 3.7e-186 655.2 432 74.5
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.1e-185 653.7 439 74.9
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.1e-185 653.7 442 72.9
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 1.1e-185 653.7 445 73.0
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.4e-185 653.3 437 72.3
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 1.4e-185 653.3 442 73.5
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.8e-185 652.9 434 74.7
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 2.4e-185 652.5 431 73.8
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 3.1e-185 652.1 429 75.8
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 3.1e-185 652.1 465 70.5
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 2.0e-184 649.4 432 75.7
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 7.6e-184 647.5 435 73.6
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.3e-183 646.7 432 72.7
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.3e-183 646.7 434 75.1
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 1.7e-183 646.4 434 72.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.8e-183 645.2 445 73.3
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 5.0e-183 644.8 435 73.1
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 8.5e-183 644.0 445 72.4
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.1e-182 643.7 442 73.1
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.2e-181 640.2 425 73.6
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.7e-181 639.0 433 73.2
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 6.1e-181 637.9 437 71.4
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 6.1e-181 637.9 439 70.8
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.8e-180 636.3 438 71.0
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 1.9e-179 632.9 436 71.3
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.9e-179 632.9 435 70.8
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 3.3e-179 632.1 437 70.7
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.6e-178 629.8 437 71.9
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 8.2e-178 627.5 426 71.6
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 5.3e-177 624.8 414 72.0
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.6e-176 622.5 437 70.3
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 3.4e-176 622.1 431 70.3
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 4.5e-176 621.7 431 71.0
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 7.7e-176 620.9 427 71.0
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.2e-175 619.4 460 68.5
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 8.5e-175 617.5 434 70.0
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.5e-174 615.9 429 71.1
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.8e-172 609.8 432 69.9
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 3.9e-172 608.6 431 69.6
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.1e-171 607.1 409 74.1
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.5e-171 606.7 447 67.3
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.5e-171 606.7 449 69.5
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 3.3e-171 605.5 446 67.5
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 1.3e-170 603.6 432 69.7
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.5e-168 596.7 410 72.7
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 6.1e-165 584.7 429 69.7
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 6.1e-165 584.7 397 71.3
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.0e-164 583.9 416 70.7
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.1e-161 572.4 411 69.1
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 5.5e-158 561.6 425 67.1
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.2e-157 560.5 361 74.5
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.2e-155 553.9 341 77.1
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 6.3e-154 548.1 421 66.7
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.9e-150 536.6 431 62.9
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-148 530.0 383 68.4
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-147 527.3 383 68.1
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 6.3e-146 521.5 344 75.3
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 7.0e-145 518.1 649 46.8
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 9.1e-145 517.7 378 67.7
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.4e-140 503.8 335 72.5
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.6e-136 490.3 429 56.2
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.7e-136 489.6 421 63.4
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 7.3e-134 481.5 445 57.1
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 2.0e-131 473.4 484 55.0
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.2e-129 466.1 421 58.9
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.2e-129 466.1 323 73.1
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.6e-128 463.8 424 57.1
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 3.5e-128 462.6 438 58.9
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 3.9e-127 459.1 387 61.2
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 2.8e-125 453.0 422 56.4
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 3.4e-123 446.0 280 78.6
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 2.4e-121 439.9 444 53.8
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 2.4e-121 439.9 275 78.5
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 2.0e-120 436.8 280 77.9
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.7e-120 436.4 381 60.9
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.0e-119 434.5 280 76.1
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 6.8e-116 421.8 426 55.4
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 6.4e-114 415.2 363 56.2
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 8.3e-114 414.8 277 73.6
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 5.1e-111 405.6 431 52.7
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.1e-109 400.2 281 71.9
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.4e-105 387.5 425 51.5
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.1e-102 377.9 445 44.9
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.2e-101 374.4 396 53.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.4e-100 370.9 282 65.6
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 4.9e-98 362.5 426 50.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.4e-97 360.9 432 47.7
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.2e-91 341.3 205 78.5
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 9.9e-91 338.2 205 79.5
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 3.2e-89 333.2 403 49.9
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.8e-76 290.8 338 45.9
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.6e-72 276.2 152 86.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.3e-68 262.7 163 77.3
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.3e-68 262.7 163 77.3
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.0e-66 258.5 163 76.1
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 4.7e-56 223.0 173 63.0
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.4e-55 221.5 147 70.1
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 3.0e-47 193.7 127 72.4
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 5.2e-47 193.0 119 75.6
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.4e-46 189.9 124 70.2
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 9.7e-46 188.7 127 69.3
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 5.0e-42 176.4 121 64.5
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.4e-39 168.3 95 85.3
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 3.0e-39 167.2 123 68.3
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 1.7e-34 151.4 285 34.0
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 1.5e-33 148.3 105 71.4
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.6e-32 143.7 112 64.3
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 3.4e-30 137.1 163 48.5
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 7.2e-25 119.4 97 59.8
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 4.4e-22 110.2 104 53.8
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 5.7e-22 109.8 75 68.0
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.1e-16 91.3 69 66.7
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 1.4e-15 88.6 61 68.9
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.2e-15 86.7 45 86.7
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 3.4e-14 84.0 69 66.7
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 1.7e-13 81.6 48 72.9
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.7e-13 80.5 66 65.2


User provided reference genes

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