Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.2e-249 865.1 440 100.0
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.5e-240 833.9 440 96.4
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.6e-239 832.4 440 96.4
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.4e-235 818.5 440 95.7
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.8e-222 775.8 443 91.2
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 5.1e-185 651.4 443 77.4
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 2.5e-184 649.0 334 99.1
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 5.6e-176 621.3 454 73.3
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.8e-174 616.3 450 73.8
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.8e-143 512.7 444 64.4
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.0e-141 506.5 415 66.0
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.2e-139 498.8 444 62.4
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 1.2e-138 497.3 424 65.8
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.2e-135 486.5 407 64.9
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.4e-134 483.8 404 64.4
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 1.8e-134 483.4 416 63.7
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 9.1e-134 481.1 420 64.0
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 1.3e-132 477.2 411 63.7
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.5e-131 473.8 445 60.9
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 1.5e-128 463.8 416 62.7
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 3.7e-127 459.1 407 63.1
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 6.3e-127 458.4 453 58.1
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 2.9e-124 449.5 418 60.8
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 2.1e-122 443.4 451 57.0
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 4.8e-119 432.2 443 54.9
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.2e-117 427.6 447 56.2
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.7e-116 423.7 410 57.6
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.9e-115 420.2 357 63.3
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 3.3e-115 419.5 435 54.3
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 5.5e-115 418.7 449 54.8
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 5.5e-115 418.7 448 55.6
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 6.1e-114 415.2 414 58.0
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 6.1e-114 415.2 452 53.8
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 8.0e-114 414.8 435 54.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 2.3e-113 413.3 438 54.6
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.2e-112 411.0 436 53.4
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 3.4e-112 409.5 400 57.2
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 1.3e-111 407.5 435 53.3
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.2e-111 406.8 404 56.2
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 3.7e-111 406.0 411 54.3
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 3.7e-111 406.0 443 54.9
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 4.9e-111 405.6 487 51.1
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 2.0e-109 400.2 445 53.9
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 3.5e-109 399.4 450 53.8
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.5e-107 393.3 443 54.6
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 3.6e-106 389.4 305 68.2
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.0e-105 387.9 416 53.4
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.2e-104 384.4 353 59.8
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.2e-104 384.4 457 53.8
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 9.8e-104 381.3 427 51.5
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 1.3e-103 380.9 450 52.7
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.9e-102 377.1 430 50.7
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 2.4e-102 376.7 406 53.4
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 5.4e-102 375.6 410 53.4
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 3.6e-98 362.8 422 50.5
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 8.0e-98 361.7 379 54.6
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 5.8e-96 355.5 480 46.9
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.6e-93 347.4 466 48.1
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 2.7e-93 346.7 413 51.1
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 3.5e-93 346.3 437 47.6
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.7e-92 344.0 449 49.0
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 2.3e-92 343.6 415 48.4
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 3.0e-92 343.2 417 49.6
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 5.1e-92 342.4 442 47.5
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 9.5e-91 338.2 428 50.5
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.1e-89 334.7 449 48.6
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 2.0e-88 330.5 463 45.1
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 4.4e-88 329.3 288 60.1
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 7.6e-88 328.6 408 49.5
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.9e-87 326.6 412 48.8
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.7e-87 326.2 305 59.0
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 3.2e-86 323.2 337 55.5
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 4.1e-86 322.8 311 56.9
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 3.3e-83 313.2 403 50.1
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 5.2e-81 305.8 299 57.2
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 3.8e-79 299.7 362 50.8
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.9e-78 297.4 290 57.2
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 2.4e-78 297.0 427 47.3
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 7.1e-78 295.4 262 61.8
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 2.1e-77 293.9 328 54.6
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 4.6e-77 292.7 406 46.8
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 6.0e-77 292.4 439 43.7
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 3.0e-76 290.0 416 45.9
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 9.9e-72 275.0 419 43.7
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.9e-71 273.5 368 46.2
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 2.9e-71 273.5 327 50.8
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 8.4e-71 271.9 311 51.8
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 5.4e-70 269.2 414 46.4
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 5.4e-70 269.2 384 45.3
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 7.1e-70 268.9 334 47.9
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 9.3e-70 268.5 402 46.3
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 6.9e-65 252.3 359 46.8
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 4.5e-64 249.6 354 45.8
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.9e-62 244.2 268 54.9
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 3.2e-62 243.4 340 47.4
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.0e-60 238.4 324 46.9
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.3e-60 238.0 327 46.5
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 5.1e-60 236.1 407 40.3
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 5.5e-54 216.1 414 40.3
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 1.1e-49 201.8 414 38.2
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.8e-49 201.1 378 42.6
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 9.0e-49 198.7 411 38.7
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 5.8e-48 196.1 415 36.9
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 3.8e-47 193.4 407 37.8
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 6.5e-47 192.6 413 37.5
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 5.5e-46 189.5 412 37.9
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-45 188.3 412 36.7
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 1.6e-45 188.0 412 36.7
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 2.7e-45 187.2 349 40.1
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.0e-44 185.3 430 36.0
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.9e-44 183.3 308 42.9
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 1.1e-43 181.8 416 36.1
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 1.2e-40 171.8 296 38.9
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 2.6e-40 170.6 421 35.4
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 2.6e-40 170.6 421 35.2
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 1.9e-38 164.5 418 35.6
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 2.7e-37 160.6 300 40.7
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.4e-36 158.3 414 35.3
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.3e-36 157.5 443 33.4
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 3.0e-36 157.1 413 35.1
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.5e-35 154.8 196 45.4
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 2.9e-31 140.6 350 34.3
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 3.6e-29 133.7 124 58.9
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.0e-28 132.1 302 34.4
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.4e-25 121.7 188 44.1
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 4.1e-25 120.2 206 41.3
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 5.0e-23 113.2 425 32.5
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.0e-20 103.6 133 48.1
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 4.8e-18 96.7 103 52.4
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 1.1e-17 95.5 368 30.7
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.4e-17 94.4 390 29.7
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 5.3e-17 93.2 228 32.9
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 9.1e-17 92.4 191 36.1
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 5.9e-16 89.7 176 36.9
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.3e-15 88.6 384 29.2
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.2e-15 87.8 382 27.2
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 8.8e-12 75.9 77 48.1
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 4.5e-08 63.5 63 52.4
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 4.5e-08 63.5 63 52.4
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 2.2e-07 61.2 60 51.7
SEGI_09816 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 2.2e-07 61.2 159 31.4


User provided reference genes

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