Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 9.5e-240 833.2 442 100.0
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.6e-223 779.2 435 94.9
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 8.1e-223 776.9 399 98.7
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 9.9e-213 743.4 399 94.7
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.1e-200 703.4 401 87.5
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 6.4e-196 687.6 401 85.0
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.4e-195 686.4 401 84.5
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.0e-193 680.2 402 83.6
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.3e-193 679.9 402 83.6
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 3.0e-193 678.7 402 83.3
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.6e-191 672.9 352 97.4
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.2e-188 662.5 401 83.3
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.1e-186 656.0 402 82.1
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 1.8e-185 652.9 399 81.5
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.3e-185 652.5 402 81.3
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.9e-185 651.7 405 80.5
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.1e-185 651.4 399 80.5
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 6.7e-185 651.0 402 81.3
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 8.7e-185 650.6 399 79.9
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 8.7e-185 650.6 401 79.6
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 2.5e-184 649.0 401 80.0
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 3.3e-184 648.7 399 79.7
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.3e-184 648.7 401 79.6
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 7.4e-184 647.5 401 81.0
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 9.6e-184 647.1 402 80.6
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.1e-183 646.0 401 79.6
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 2.8e-183 645.6 401 80.0
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 4.8e-183 644.8 401 78.6
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 4.8e-183 644.8 425 76.5
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.8e-182 642.9 397 79.8
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 3.1e-182 642.1 401 79.8
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 3.1e-182 642.1 402 79.4
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 6.9e-182 641.0 402 79.9
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.2e-181 640.2 399 79.2
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 2.0e-181 639.4 397 81.4
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 2.0e-181 639.4 401 79.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 2.6e-181 639.0 403 79.2
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 2.6e-181 639.0 399 78.9
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.7e-180 636.3 401 78.8
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.8e-180 635.2 399 79.2
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 8.4e-180 634.0 403 78.9
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.1e-179 633.6 393 81.2
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.9e-179 632.9 399 78.7
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 7.1e-179 630.9 401 78.3
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.2e-178 630.2 399 77.7
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 6.0e-178 627.9 402 78.9
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 7.9e-178 627.5 397 76.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 7.9e-178 627.5 397 76.8
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 7.9e-178 627.5 397 78.8
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 2.3e-177 625.9 395 78.2
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 5.1e-177 624.8 399 77.2
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 8.7e-177 624.0 403 76.9
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 8.7e-177 624.0 400 78.0
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 8.7e-177 624.0 396 77.5
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 8.7e-177 624.0 399 76.7
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.5e-176 623.2 402 77.6
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 4.3e-176 621.7 402 78.6
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 5.7e-176 621.3 408 77.5
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 7.4e-176 620.9 400 77.0
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 7.4e-176 620.9 402 77.4
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 9.7e-176 620.5 400 78.0
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 6.3e-175 617.8 419 74.0
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.4e-174 616.7 402 77.1
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.1e-174 615.5 404 76.0
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 6.9e-174 614.4 400 76.0
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.2e-173 613.6 399 77.4
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.5e-173 613.2 402 76.6
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 4.5e-173 611.7 404 75.5
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 4.5e-173 611.7 404 75.2
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 7.7e-173 610.9 402 76.1
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 7.7e-173 610.9 394 77.2
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.0e-172 610.5 402 76.4
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.7e-172 609.8 402 76.4
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 2.9e-172 609.0 402 76.1
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 2.9e-172 609.0 401 76.1
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 2.9e-172 609.0 402 76.1
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 3.8e-172 608.6 404 75.0
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.8e-172 608.6 404 75.0
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 6.5e-172 607.8 394 76.6
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 8.5e-172 607.4 401 76.3
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-171 606.7 402 76.1
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.9e-171 606.3 402 74.1
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.9e-171 606.3 399 75.9
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 4.2e-171 605.1 384 78.1
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.2e-171 605.1 404 75.0
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 5.5e-171 604.7 420 73.8
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 9.4e-171 604.0 433 71.8
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-170 603.6 402 75.6
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 2.7e-170 602.4 401 75.8
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 2.7e-170 602.4 404 74.8
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 4.6e-170 601.7 393 76.8
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 6.1e-170 601.3 401 75.6
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 1.8e-169 599.7 399 75.7
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.8e-169 599.7 394 76.9
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.3e-169 599.4 402 75.1
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 3.9e-169 598.6 384 77.3
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.5e-168 596.7 392 76.8
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 3.3e-168 595.5 399 74.7
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.7e-167 593.2 404 74.5
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 4.8e-167 591.7 366 80.1
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.1e-166 590.5 553 58.8
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 6.9e-166 587.8 399 73.4
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 5.9e-165 584.7 401 74.6
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 2.2e-164 582.8 396 73.5
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.2e-163 578.6 497 62.6
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 5.5e-163 578.2 416 70.9
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.7e-162 575.1 444 67.6
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.4e-161 573.5 443 67.7
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 6.7e-161 571.2 402 73.4
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 8.8e-161 570.9 362 78.2
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.6e-160 569.3 452 67.0
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 3.6e-154 548.9 398 68.3
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.7e-141 506.1 311 79.1
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.5e-139 500.4 329 78.4
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 3.6e-138 495.7 316 79.4
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.5e-136 490.3 292 81.2
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 3.4e-128 462.6 309 76.1
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 6.4e-119 431.8 391 56.0
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.4e-118 430.6 344 67.4
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 4.3e-115 419.1 361 55.7
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 7.5e-112 408.3 354 56.5
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 9.8e-112 407.9 260 79.6
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.7e-108 397.1 340 55.9
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.4e-94 350.9 349 51.3
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.6e-93 347.4 233 78.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 1.1e-91 341.3 226 75.2
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.1e-82 310.5 284 52.1
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 9.6e-75 285.0 334 45.8
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 6.2e-66 255.8 366 38.8
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 3.0e-60 236.9 233 57.1
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.1e-59 235.0 205 64.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 5.7e-59 232.6 387 38.0
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 5.3e-57 226.1 288 49.3
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 7.7e-56 222.2 171 69.6
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.6e-43 180.6 99 89.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.6e-32 144.8 80 87.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.6e-32 144.1 82 86.6
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.5e-27 128.3 130 56.9
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.7e-27 126.3 81 74.1
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 3.6e-21 107.1 105 47.6
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 3.0e-20 104.0 65 72.3
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.4e-17 95.1 75 62.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 2.1e-13 81.3 60 70.0
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 7.8e-08 62.8 44 68.2
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 6.6e-07 59.7 38 71.1
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.5e-06 58.5 42 73.8
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 4.3e-06 57.0 319 25.1


User provided reference genes

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