Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.3e-302 1042.3 571 100.0
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.8e-290 1000.3 570 96.8
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 3.8e-289 997.7 571 96.3
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.5e-269 932.6 575 88.5
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 6.3e-244 847.4 584 75.5
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 2.8e-236 822.0 586 77.5
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 3.7e-236 821.6 585 74.5
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 7.7e-226 787.3 579 70.1
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 1.0e-225 786.9 572 72.0
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.5e-221 773.1 577 69.0
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 2.2e-220 769.2 576 70.0
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 6.3e-220 767.7 573 69.5
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 2.4e-219 765.8 572 68.7
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 3.5e-218 761.9 569 68.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 3.5e-218 761.9 572 68.4
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 5.9e-218 761.1 582 67.9
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.3e-217 760.0 568 67.8
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.2e-217 759.2 583 68.3
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.8e-217 758.4 572 67.7
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 1.5e-216 756.5 572 67.8
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.9e-216 756.1 485 76.3
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.5e-216 755.7 482 77.6
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.2e-216 755.4 482 77.4
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 4.2e-216 755.0 597 68.0
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 3.6e-215 751.9 482 77.2
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 1.0e-214 750.4 567 68.6
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 7.5e-213 744.2 477 76.9
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 9.8e-213 743.8 541 69.7
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 9.8e-213 743.8 569 67.0
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.3e-212 743.4 578 66.6
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 6.3e-212 741.1 476 77.5
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 6.3e-212 741.1 463 78.0
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 1.4e-211 740.0 578 65.1
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.4e-211 740.0 484 75.6
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.4e-211 740.0 568 68.7
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.8e-211 739.6 476 75.8
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.4e-211 739.2 578 64.9
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 1.2e-210 736.9 463 78.0
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.0e-210 736.1 477 75.5
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.0e-210 736.1 464 77.6
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.7e-209 733.0 559 68.2
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 2.3e-209 732.6 576 66.1
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 2.9e-209 732.3 553 67.1
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 3.8e-209 731.9 560 68.0
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.5e-208 729.9 482 74.7
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.5e-208 729.9 464 77.6
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 2.5e-208 729.2 470 77.2
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 3.3e-208 728.8 459 77.8
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 4.2e-208 728.4 458 77.9
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 4.2e-208 728.4 475 74.7
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 5.5e-208 728.0 458 77.9
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 9.5e-208 727.2 458 77.7
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.2e-207 726.9 477 73.6
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.2e-207 726.9 458 77.7
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-207 726.9 582 65.3
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 2.1e-207 726.1 479 74.3
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.1e-207 726.1 471 75.8
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.8e-207 725.7 458 77.5
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 2.8e-207 725.7 458 77.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 2.8e-207 725.7 565 67.1
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.8e-207 725.7 470 76.6
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 4.7e-207 724.9 537 68.3
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.7e-207 724.9 560 66.4
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 6.1e-207 724.5 560 66.6
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.0e-206 723.8 490 73.9
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 1.0e-206 723.8 468 76.5
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.4e-206 723.4 557 67.1
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 2.3e-206 722.6 470 76.8
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 5.2e-206 721.5 560 66.2
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 6.8e-206 721.1 466 76.2
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.5e-205 719.9 482 75.3
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.0e-205 719.5 573 65.8
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 2.6e-205 719.2 471 76.2
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 3.4e-205 718.8 576 67.2
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.7e-204 716.5 464 75.9
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.7e-204 715.3 451 79.4
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.9e-204 714.9 492 73.4
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 5.4e-203 711.4 475 74.5
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.6e-202 709.9 557 65.2
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 4.5e-202 708.4 543 66.9
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 5.9e-202 708.0 572 65.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 2.3e-201 706.1 559 67.3
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.9e-201 705.7 477 73.8
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 8.6e-201 704.1 446 77.8
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.2e-199 700.3 505 71.1
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.6e-199 699.9 567 64.2
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.1e-199 698.0 583 63.6
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 6.1e-199 698.0 438 77.9
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 8.0e-199 697.6 479 72.7
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 3.1e-198 695.7 485 72.0
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.6e-197 692.6 477 73.0
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.7e-196 689.9 438 76.5
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.1e-195 687.2 466 73.4
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 5.4e-195 684.9 470 70.4
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 3.0e-193 679.1 602 62.1
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.2e-191 673.7 462 73.2
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 2.3e-182 642.9 573 62.1
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 3.6e-175 619.0 386 79.0
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.9e-172 609.4 476 63.9
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.2e-171 605.5 434 69.4
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 5.6e-160 568.5 400 73.0
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.9e-147 526.9 448 59.2
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 6.0e-146 521.9 326 79.1
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.8e-145 520.4 453 57.2
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 8.7e-145 518.1 322 77.0
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 7.2e-139 498.4 449 56.1
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 2.5e-131 473.4 461 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.8e-110 404.1 401 52.4
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.6e-106 389.8 538 42.9
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.8e-102 377.5 460 48.3
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.8e-102 377.5 467 47.3
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 4.1e-102 376.3 464 47.4
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.7e-101 373.6 467 46.9
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 7.2e-99 365.5 255 72.2
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 8.8e-97 358.6 468 47.6
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 2.6e-96 357.1 497 41.9
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 2.2e-95 354.0 457 45.7
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.9e-87 326.2 469 44.1
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 9.2e-78 295.4 176 78.4
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.5e-75 288.1 510 36.9
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.6e-74 284.6 169 81.1
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 2.4e-49 201.1 215 58.1
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.9e-46 191.4 175 59.4
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.7e-45 187.6 131 77.1
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 2.3e-36 157.9 138 59.4
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.0e-28 132.5 102 68.6
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.9e-28 130.6 105 61.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.1e-25 122.5 141 45.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 4.1e-25 120.6 104 69.2
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.9e-21 106.3 58 91.4
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.3e-10 72.4 44 79.5
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 1.8e-09 68.6 136 44.1
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.4e-09 68.2 44 75.0
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 8.5e-07 59.7 48 64.6
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 8.5e-07 59.7 57 61.4


User provided reference genes

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