Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.6e-138 496.1 264 100.0
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 2.3e-132 475.7 282 92.6
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.4e-129 466.5 283 91.2
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.2e-128 463.4 283 90.8
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.2e-126 454.1 295 86.8
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 2.4e-121 439.1 283 86.2
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 6.1e-109 397.9 292 78.4
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.6e-104 383.3 293 76.5
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 6.1e-101 371.3 287 73.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 4.0e-92 342.0 220 83.2
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 7.5e-91 337.8 285 69.5
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.7e-90 336.7 294 67.3
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 2.2e-90 336.3 289 67.5
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.7e-90 335.5 292 67.8
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 6.3e-90 334.7 299 66.6
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 8.3e-90 334.3 222 81.5
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 1.1e-89 334.0 281 69.4
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.4e-89 332.8 294 67.3
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 2.4e-89 332.8 300 64.3
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 2.4e-89 332.8 236 76.7
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 3.1e-89 332.4 294 67.7
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 3.1e-89 332.4 302 65.9
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 3.1e-89 332.4 291 68.0
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.4e-89 331.6 299 66.2
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 7.0e-89 331.3 256 72.3
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 9.1e-89 330.9 303 65.3
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 1.2e-88 330.5 289 67.8
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.6e-88 330.1 303 64.7
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.6e-88 330.1 303 64.7
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.6e-88 330.1 215 82.8
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.6e-88 330.1 223 78.9
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.6e-88 330.1 222 81.1
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.0e-88 329.7 287 67.9
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.0e-88 329.7 221 79.6
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.5e-88 328.9 301 64.1
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 3.5e-88 328.9 300 65.0
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 4.5e-88 328.6 289 66.8
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 4.5e-88 328.6 253 71.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 4.5e-88 328.6 293 64.8
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 5.9e-88 328.2 287 67.2
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 7.7e-88 327.8 289 65.7
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 7.7e-88 327.8 293 66.2
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.0e-87 327.4 253 71.5
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.0e-87 327.4 297 66.7
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 2.2e-87 326.2 283 67.8
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.2e-87 326.2 263 70.7
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 2.2e-87 326.2 214 80.4
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.8e-87 325.5 283 67.5
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 3.8e-87 325.5 295 65.4
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 6.5e-87 324.7 283 67.5
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 6.5e-87 324.7 283 67.1
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-86 323.9 281 66.9
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.5e-86 323.6 287 67.9
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.5e-86 323.6 253 73.9
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.9e-86 323.2 284 68.0
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.9e-86 323.2 289 66.1
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 3.2e-86 322.4 233 75.1
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 4.2e-86 322.0 292 65.1
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 5.5e-86 321.6 282 64.9
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.5e-86 321.6 208 81.2
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 7.2e-86 321.2 233 75.1
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 7.2e-86 321.2 217 79.3
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 9.4e-86 320.9 285 66.3
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.2e-85 320.5 246 72.4
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 2.7e-85 319.3 285 64.9
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 2.7e-85 319.3 291 64.9
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.7e-85 318.5 223 77.1
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 6.1e-85 318.2 294 64.6
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.1e-85 318.2 297 66.3
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.1e-85 318.2 232 75.0
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.0e-84 317.4 222 77.9
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.8e-84 316.6 214 78.0
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 3.0e-84 315.8 227 74.9
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 6.8e-84 314.7 251 68.5
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 6.8e-84 314.7 286 64.7
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 6.8e-84 314.7 286 64.0
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 2.0e-83 313.2 216 77.3
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 2.0e-83 313.2 293 64.2
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.6e-83 312.8 288 65.6
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.6e-83 312.8 287 65.2
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 7.5e-83 311.2 220 78.2
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 8.3e-82 307.8 240 71.7
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 1.4e-81 307.0 281 65.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.8e-81 306.6 284 64.8
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 7.0e-81 304.7 289 61.6
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 7.0e-81 304.7 197 79.7
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 7.0e-81 304.7 296 63.9
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.2e-80 303.9 295 60.7
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.2e-80 303.9 243 68.3
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.0e-80 303.1 280 63.9
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.0e-80 303.1 286 62.9
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 2.7e-80 302.8 236 70.8
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 3.5e-80 302.4 243 69.5
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 4.5e-80 302.0 279 64.5
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 4.5e-80 302.0 288 63.9
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 5.9e-80 301.6 286 62.6
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 7.7e-80 301.2 261 65.1
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.3e-79 300.4 286 62.9
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.7e-79 300.1 217 74.7
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 2.3e-79 299.7 261 64.8
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 2.9e-79 299.3 224 73.2
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 2.9e-79 299.3 243 69.1
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 3.8e-79 298.9 243 68.3
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.8e-79 298.9 261 64.8
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 3.8e-79 298.9 195 79.0
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 6.6e-79 298.1 261 64.4
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.1e-78 297.4 261 65.9
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.1e-78 297.4 261 65.9
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 1.9e-78 296.6 224 72.3
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.9e-78 296.6 243 69.5
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.5e-78 296.2 262 66.0
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.5e-78 296.2 301 59.1
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 3.3e-78 295.8 243 69.1
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.3e-78 295.8 192 79.7
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 1.2e-77 293.9 348 54.0
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.6e-77 293.5 262 65.6
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 2.1e-77 293.1 267 64.4
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 2.8e-77 292.7 360 53.3
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 4.7e-77 292.0 299 58.9
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 2.3e-76 289.7 205 77.6
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 7.5e-75 284.6 197 77.2
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.1e-73 280.8 215 69.8
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.2e-73 279.3 281 57.3
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 4.1e-73 278.9 274 62.0
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.1e-73 278.9 266 62.0
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.2e-72 277.3 205 72.2
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.6e-72 276.9 183 77.0
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 7.8e-72 274.6 224 70.5
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.3e-71 273.9 200 72.5
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.5e-70 269.6 206 71.4
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.7e-69 265.4 312 53.8
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 6.2e-69 265.0 267 62.5
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 6.2e-69 265.0 283 56.9
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.4e-68 263.8 241 63.5
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 6.8e-68 261.5 307 54.1
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 6.8e-68 261.5 201 68.2
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 8.9e-68 261.2 201 68.7
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 3.4e-67 259.2 232 63.8
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 2.2e-66 256.5 209 67.0
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 6.4e-66 255.0 258 58.1
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 5.4e-65 251.9 205 69.3
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 7.0e-65 251.5 247 56.7
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.1e-62 244.2 203 66.5
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 6.8e-60 235.0 192 66.1
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 7.3e-54 214.9 181 62.4
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.5e-51 207.2 204 57.8
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 2.7e-48 196.4 187 59.9
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.7e-47 193.7 196 58.2
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.5e-46 189.9 135 74.8
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.7e-39 167.2 107 83.2
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 2.6e-35 153.3 286 41.3
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.4e-33 147.5 91 79.1
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.7e-31 140.6 262 38.2
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.5e-30 136.7 109 65.1
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 4.5e-27 125.9 231 37.2
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.7e-26 124.0 219 39.7
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.3e-23 114.4 78 78.2
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 7.4e-22 108.6 63 85.7
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.1e-21 107.1 63 84.1
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.8e-20 104.0 116 52.6
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.5e-19 100.9 92 55.4
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 3.5e-16 89.7 173 35.8
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 3.1e-12 76.6 62 66.1
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 2.5e-06 57.0 97 42.3


User provided reference genes

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