Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 1.3e-51 206.1 99 100.0
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.3e-51 206.1 99 100.0
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.3e-51 206.1 99 100.0
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.8e-50 202.2 99 97.0
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 4.1e-50 201.1 99 98.0
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 9.1e-50 199.9 99 99.0
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 1.8e-45 185.7 100 91.0
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 5.2e-37 157.5 96 79.2
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 9.8e-36 153.3 96 79.2
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 9.8e-36 153.3 96 79.2
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 2.6e-28 128.6 89 70.8
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 2.2e-27 125.6 90 71.1
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 4.9e-27 124.4 89 70.8
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.1e-26 123.2 95 67.4
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 1.8e-26 122.5 95 66.3
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 3.2e-26 121.7 88 71.6
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 4.1e-26 121.3 95 66.3
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 5.4e-26 120.9 88 70.5
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 9.2e-26 120.2 93 66.7
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 4.6e-25 117.9 93 66.7
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.3e-24 116.3 95 64.2
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.3e-24 116.3 93 65.6
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 8.6e-24 113.6 94 63.8
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 8.6e-24 113.6 94 63.8
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.1e-23 113.2 93 63.4
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.1e-23 113.2 99 60.6
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 1.1e-23 113.2 89 68.5
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 2.5e-23 112.1 113 55.8
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 1.2e-22 109.8 99 57.6
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 4.7e-22 107.8 97 61.9
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 6.2e-22 107.5 95 58.9
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 6.2e-22 107.5 88 65.9
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 1.4e-21 106.3 83 63.9
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 1.4e-21 106.3 95 54.7
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 4.0e-21 104.8 84 64.3
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 8.9e-21 103.6 83 63.9
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 1.5e-20 102.8 87 60.9
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 2.0e-20 102.4 86 62.8
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 3.4e-20 101.7 88 60.2
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 5.8e-20 100.9 93 55.9
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 2.2e-19 99.0 79 63.3
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 3.7e-19 98.2 95 53.7
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 4.9e-19 97.8 65 70.8
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 4.9e-19 97.8 88 61.4
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 8.3e-19 97.1 95 57.9
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.9e-18 95.9 88 60.2
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 3.2e-18 95.1 88 58.0
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 2.0e-17 92.4 61 73.8
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 3.5e-17 91.7 95 56.8
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 4.6e-17 91.3 73 67.1
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 4.6e-17 91.3 91 53.8
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 4.6e-17 91.3 91 53.8
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 7.8e-17 90.5 91 53.8
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.0e-16 88.6 83 53.0
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 3.0e-16 88.6 87 56.3
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.9e-16 88.2 63 66.7
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.9e-16 88.2 63 66.7
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.5e-15 85.5 95 48.4
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 3.3e-15 85.1 86 55.8
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 5.6e-15 84.3 88 50.0
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 3.6e-14 81.6 104 47.1
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 3.6e-14 81.6 104 47.1
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 4.7e-14 81.3 105 46.7
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 1.1e-13 80.1 104 46.2
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 1.8e-13 79.3 106 45.3
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 4.0e-13 78.2 87 50.6
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 4.0e-13 78.2 73 53.4
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 5.2e-13 77.8 90 48.9
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 5.2e-13 77.8 76 53.9
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 8.9e-13 77.0 120 42.5
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 1.3e-11 73.2 114 43.0
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 1.3e-11 73.2 104 44.2
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 2.9e-11 72.0 108 46.3
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 3.2e-10 68.6 111 40.5
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 3.2e-10 68.6 111 40.5
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 5.4e-10 67.8 111 40.5
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 7.1e-10 67.4 122 37.7
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 7.1e-10 67.4 112 40.2
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 7.1e-10 67.4 112 40.2
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 9.2e-10 67.0 58 58.6
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 8.6e-08 60.5 51 56.9
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 1.1e-07 60.1 49 51.0
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 1.5e-07 59.7 60 48.3
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 1.5e-07 59.7 93 38.7
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 1.9e-07 59.3 51 54.9
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 1.9e-07 59.3 52 51.9
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 3.3e-07 58.5 51 56.9
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 3.3e-07 58.5 65 46.2
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 3.3e-07 58.5 62 50.0
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 3.3e-07 58.5 49 53.1
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 5.6e-07 57.8 51 54.9
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 7.3e-07 57.4 51 56.9
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 7.3e-07 57.4 95 38.9
SEGI_14454 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 7.3e-07 57.4 52 50.0
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 7.3e-07 57.4 52 53.8
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 9.5e-07 57.0 51 56.9
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 9.5e-07 57.0 51 56.9
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 9.5e-07 57.0 41 63.4
SMO196G0045 Selaginella moellendorffii HOM05D002359 ORTHO05D002394 1.2e-06 56.6 68 44.1
Os05g0524100 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 2.1e-06 55.8 39 64.1
Aqoxy3G04192 Aquilegia oxysepala HOM05D002019 ORTHO05D002150 2.8e-06 55.5 52 48.1
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 2.8e-06 55.5 71 47.9
CBR_g74676 Chara braunii HOM05D002019 ORTHO05D010005 2.8e-06 55.5 42 61.9
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 2.8e-06 55.5 51 54.9
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 3.6e-06 55.1 51 51.0
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 3.6e-06 55.1 51 52.9
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 3.6e-06 55.1 56 51.8
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 4.7e-06 54.7 51 56.9
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 4.7e-06 54.7 51 58.8
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 4.7e-06 54.7 51 49.0
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 4.7e-06 54.7 51 54.9
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 6.2e-06 54.3 53 47.2
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 6.2e-06 54.3 52 50.0
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 6.2e-06 54.3 52 51.9
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 8.1e-06 53.9 51 56.9
LjContig00141g0027651 Lotus japonicus HOM05D002019 ORTHO05D002150 8.1e-06 53.9 51 58.8
Phvul.008G241900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 8.1e-06 53.9 51 58.8


User provided reference genes

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