Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2521 Fragaria x ananassa HOM05D014733 ORTHO05D015653 8.0e-112 407.1 212 100.0
FAN03G0274 Fragaria x ananassa HOM05D014733 ORTHO05D015653 3.9e-106 388.3 231 90.5
FAN14G3747 Fragaria x ananassa HOM05D014733 ORTHO05D015653 7.8e-99 364.0 254 80.3
FAN11G1052 Fragaria x ananassa HOM05D014733 ORTHO05D015653 4.0e-79 298.5 220 77.7
FvH4_2g07270 Fragaria vesca HOM05D014733 ORTHO05D015653 3.3e-57 225.7 166 76.5
FvH4_4g14620 Fragaria vesca HOM05D014733 ORTHO05D015653 6.1e-35 151.8 93 87.1
FvH4_5g28200 Fragaria vesca HOM05D014733 ORTHO05D015653 9.1e-31 137.9 108 77.8
FAN14G1973 Fragaria x ananassa HOM05D002706 ORTHO05D045850 6.1e-27 125.2 86 70.9
FvH4_6g09050 Fragaria vesca HOM05D014733 ORTHO05D045850 1.4e-26 124.0 69 89.9
FAN17G2259 Fragaria x ananassa HOM05D002706 ORTHO05D015653 1.5e-25 120.6 162 53.7
FvH4_4g14310 Fragaria vesca HOM05D000431 ORTHO05D010836 3.5e-22 109.4 61 90.2
FvH4_7g06050 Fragaria vesca HOM05D014733 ORTHO05D015653 1.7e-21 107.1 59 93.2
FAN08G2603 Fragaria x ananassa HOM05D014733 ORTHO05D204938 5.5e-20 102.1 51 98.0
FAN25G1989 Fragaria x ananassa HOM05D002706 ORTHO05D015653 1.0e-13 81.3 51 80.4
RcHm_v2.0_Chr5g0057181 Rosa chinensis HOM05D002706 ORTHO05D003253 1.9e-12 77.0 135 43.0
FAN04G0945 Fragaria x ananassa HOM05D002706 ORTHO05D003253 3.3e-12 76.3 146 38.4
FAN18G2357 Fragaria x ananassa HOM05D002706 ORTHO05D003253 3.3e-12 76.3 158 38.0
FAN13G0625 Fragaria x ananassa HOM05D002706 ORTHO05D003253 4.3e-12 75.9 136 41.2
FAN08G2484 Fragaria x ananassa HOM05D002706 ORTHO05D003253 5.6e-12 75.5 135 41.5
RcHm_v2.0_Chr7g0197611 Rosa chinensis HOM05D002706 ORTHO05D003253 7.3e-12 75.1 135 40.7
FvH4_5g02490 Fragaria vesca HOM05D002706 ORTHO05D003253 3.6e-11 72.8 135 40.7
arahy.Tifrunner.gnm1.ann1.0UMA9Y Arachis hypogaea HOM05D002706 ORTHO05D003253 3.0e-10 69.7 104 42.3
arahy.Tifrunner.gnm1.ann1.SSK3YK Arachis hypogaea HOM05D002706 ORTHO05D003253 3.0e-10 69.7 104 42.3
FAN06G0175 Fragaria x ananassa HOM05D000528 ORTHO05D020566 5.2e-10 68.9 41 90.2
Glyma.11G065500 Glycine max HOM05D002706 ORTHO05D003253 8.9e-10 68.2 111 41.4
ECA240G0438 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.5e-09 67.4 104 42.3
RcHm_v2.0_Chr2g0166361 Rosa chinensis HOM05D002706 ORTHO05D003253 3.4e-09 66.2 134 35.8
RcHm_v2.0_Chr6g0275951 Rosa chinensis HOM05D002706 ORTHO05D003253 5.7e-09 65.5 107 39.3
ECA234G0431 Erigeron canadensis HOM05D002706 ORTHO05D003253 7.5e-09 65.1 87 46.0
HanXRQChr10g0297421 Helianthus annuus HOM05D002706 ORTHO05D003253 7.5e-09 65.1 104 41.3
FAN16G2851 Fragaria x ananassa HOM05D002706 ORTHO05D015653 9.8e-09 64.7 33 90.9
RcHm_v2.0_Chr6g0257261 Rosa chinensis HOM05D002706 ORTHO05D003253 9.8e-09 64.7 107 38.3
FAN12G4024 Fragaria x ananassa HOM05D000431 ORTHO05D010836 1.3e-08 64.3 33 100.0
TAR626G1221 Trochodendron aralioides HOM05D002706 ORTHO05D003253 1.3e-08 64.3 107 41.1
ECA234G1375 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.7e-08 63.9 104 39.4
FAN09G2356 Fragaria x ananassa HOM05D002706 ORTHO05D003253 1.7e-08 63.9 135 35.6
Glyma.01G176800 Glycine max HOM05D002706 ORTHO05D003253 2.9e-08 63.2 139 36.0
Lsat_1_v5_gn_3_114641 Lactuca sativa HOM05D002706 ORTHO05D003253 3.7e-08 62.8 104 38.5
FAN05G3038 Fragaria x ananassa HOM05D002706 ORTHO05D003253 4.9e-08 62.4 135 34.8
Hund23521 Selenicereus undatus HOM05D002706 ORTHO05D003253 4.9e-08 62.4 104 40.4
CDE02G3904 Ceratophyllum demersum HOM05D002706 ORTHO05D003253 6.4e-08 62.0 104 40.4
ECA232G2232 Erigeron canadensis HOM05D002706 ORTHO05D003253 6.4e-08 62.0 104 41.3
FvH4_1g12070 Fragaria vesca HOM05D000240 ORTHO05D001140 6.4e-08 62.0 107 40.2
FAN19G0101 Fragaria x ananassa HOM05D000240 ORTHO05D001140 6.4e-08 62.0 107 40.2
GSVIVG01019752001 Vitis vinifera HOM05D002706 ORTHO05D003253 6.4e-08 62.0 107 39.3
FAN27G1235 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.3e-08 61.6 45 64.4
Gohir.A05G115200 Gossypium hirsutum HOM05D002706 ORTHO05D003253 8.3e-08 61.6 107 39.3
Lj5g0024819 Lotus japonicus HOM05D002706 ORTHO05D003253 8.3e-08 61.6 111 38.7
CDE04G3144 Ceratophyllum demersum HOM05D002706 ORTHO05D003253 1.1e-07 61.2 104 40.4
Ca_29898_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 1.1e-07 61.2 125 39.2
FAN12G1654 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.1e-07 61.2 36 91.7
RcHm_v2.0_Chr2g0099691 Rosa chinensis HOM05D000240 ORTHO05D001140 1.1e-07 61.2 107 40.2
FAN26G0612 Fragaria x ananassa HOM05D000240 ORTHO05D001140 1.4e-07 60.8 107 39.3
vmacro17392 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 1.4e-07 60.8 101 44.6
Prupe.7G166000 Prunus persica HOM05D000240 ORTHO05D001140 1.8e-07 60.5 49 67.3
CiPaw.11G135000 Carya illinoinensis HOM05D002706 ORTHO05D003253 2.4e-07 60.1 139 33.8
Ciclev10005105m.g Citrus clementina HOM05D002706 ORTHO05D003253 2.4e-07 60.1 136 34.6
Duzib160G0388 Durio zibethinus HOM05D002706 ORTHO05D003253 2.4e-07 60.1 135 35.6
FAN23G1694 Fragaria x ananassa HOM05D000240 ORTHO05D001140 2.4e-07 60.1 107 39.3
Oeu026467.1 Olea europaea HOM05D002706 ORTHO05D003253 2.4e-07 60.1 135 36.3
Cfa015720 Carpinus fangiana HOM05D002706 ORTHO05D003253 3.2e-07 59.7 139 35.3
HanXRQChr03g0077621 Helianthus annuus HOM05D002706 ORTHO05D003253 3.2e-07 59.7 104 39.4
Ah.11g047900 Amaranthus hybridus HOM05D002706 ORTHO05D003253 4.1e-07 59.3 104 40.4
Nitab4.5_0002495g0060 Nicotiana tabacum HOM05D002706 ORTHO05D003253 4.1e-07 59.3 107 39.3
Sc01g0009590 Simmondsia chinensis HOM05D002706 ORTHO05D003253 4.1e-07 59.3 104 38.5
Ca_26354_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 5.4e-07 58.9 112 39.3
Manes.01G016300 Manihot esculenta HOM05D002706 ORTHO05D003253 5.4e-07 58.9 135 35.6
Psat6g116280 Pisum sativum HOM05D002706 ORTHO05D003253 5.4e-07 58.9 112 39.3
Solyc01g109360.3 Solanum lycopersicum HOM05D002706 ORTHO05D003253 5.4e-07 58.9 135 34.8
Sopen01g051550 Solanum pennellii HOM05D002706 ORTHO05D003253 5.4e-07 58.9 135 34.8
SGA_v2.0_scaffold181G39798 Striga asiatica HOM05D002706 ORTHO05D003253 5.4e-07 58.9 135 35.6
MELO3C005679.2 Cucumis melo HOM05D002706 ORTHO05D003253 7.0e-07 58.5 137 38.0
Nitab4.5_0001662g0040 Nicotiana tabacum HOM05D002706 ORTHO05D003253 7.0e-07 58.5 107 37.4
Nitab4.5_0004280g0080 Nicotiana tabacum HOM05D002706 ORTHO05D003253 7.0e-07 58.5 107 37.4
PGSC0003DMG400025166 Solanum tuberosum HOM05D002706 ORTHO05D003253 7.0e-07 58.5 135 34.8
SGA_v2.0_scaffold73G24346 Striga asiatica HOM05D002706 ORTHO05D003253 7.0e-07 58.5 135 35.6
TPR.G29099 Trifolium pratense HOM05D002706 ORTHO05D003253 7.0e-07 58.5 108 39.8
Cpa.g.sc13.153 Carica papaya HOM05D002706 ORTHO05D003253 9.2e-07 58.2 135 35.6
Medtr1g053270 Medicago truncatula HOM05D002706 ORTHO05D003253 9.2e-07 58.2 108 39.8
PGR031G1433 Punica granatum HOM05D002706 ORTHO05D003253 9.2e-07 58.2 135 36.3
SEGI_02662 Sequoiadendron giganteum HOM05D002706 ORTHO05D003253 9.2e-07 58.2 107 37.4
Peaxi162Scf00111g00823 Petunia axillaris HOM05D002706 ORTHO05D003253 1.2e-06 57.8 135 34.8
TPR.G14339 Trifolium pratense HOM05D002706 ORTHO05D003253 1.2e-06 57.8 124 33.9
Ah.14g085530 Amaranthus hybridus HOM05D002706 ORTHO05D003253 1.6e-06 57.4 104 37.5
MD04G1034100 Malus domestica HOM05D002706 ORTHO05D003253 2.0e-06 57.0 135 34.1
Zm00001eb416340 Zea mays HOM05D002706 ORTHO05D003253 2.0e-06 57.0 107 40.2
MSTRG.6719 Avicennia marina HOM05D002706 ORTHO05D003253 2.7e-06 56.6 135 34.8
CiPaw.12G092900 Carya illinoinensis HOM05D002706 ORTHO05D003253 2.7e-06 56.6 139 34.5
CsaV3_5G002780 Cucumis sativus L. HOM05D002706 ORTHO05D003253 2.7e-06 56.6 137 37.2
Duzib192G0782 Durio zibethinus HOM05D002706 ORTHO05D003253 2.7e-06 56.6 135 34.8
FAN14G0008 Fragaria x ananassa HOM05D002706 ORTHO05D003253 2.7e-06 56.6 89 36.0
Gohir.D05G115700 Gossypium hirsutum HOM05D002706 ORTHO05D003253 2.7e-06 56.6 135 34.1
Gorai.009G119700 Gossypium raimondii HOM05D002706 ORTHO05D003253 2.7e-06 56.6 135 34.1
MD00G1176100 Malus domestica HOM05D000240 ORTHO05D001140 2.7e-06 56.6 33 90.9
MD02G1110400 Malus domestica HOM05D000240 ORTHO05D001140 2.7e-06 56.6 71 52.1
MD02G1135300 Malus domestica HOM05D000240 ORTHO05D001140 2.7e-06 56.6 33 90.9
unitig_62.g23090 Utricularia gibba HOM05D002706 ORTHO05D003253 2.7e-06 56.6 135 36.3
Eucgr.A00956 Eucalyptus grandis HOM05D002706 ORTHO05D003253 3.5e-06 56.2 135 33.3
FvH4_6g47330 Fragaria vesca HOM05D002706 ORTHO05D003253 3.5e-06 56.2 89 36.0
MD06G1084100 Malus domestica HOM05D002706 ORTHO05D003253 3.5e-06 56.2 135 34.1
Nn1g04262 Nelumbo nucifera HOM05D002706 ORTHO05D003253 3.5e-06 56.2 135 34.1
Sabra08G0006100 Salix brachista HOM05D002706 ORTHO05D003253 3.5e-06 56.2 107 38.3
Sc22g0005590 Simmondsia chinensis HOM05D002706 ORTHO05D003253 3.5e-06 56.2 105 39.0
Solyc02g062330.3 Solanum lycopersicum HOM05D000240 ORTHO05D001140 3.5e-06 56.2 64 42.2
Sopen02g013320 Solanum pennellii HOM05D000240 ORTHO05D001140 3.5e-06 56.2 64 42.2
PGSC0003DMG400012011 Solanum tuberosum HOM05D000240 ORTHO05D001140 3.5e-06 56.2 64 42.2
CAN.G322.108 Capsicum annuum HOM05D002706 ORTHO05D003253 4.6e-06 55.8 135 34.1
Cc05_g10340 Coffea canephora HOM05D002706 ORTHO05D003253 4.6e-06 55.8 135 34.8
FAN28G2600 Fragaria x ananassa HOM05D000240 ORTHO05D001140 4.6e-06 55.8 106 37.7
Lj5g0021295 Lotus japonicus HOM05D002706 ORTHO05D003253 4.6e-06 55.8 135 33.3
Phvul.002G027700 Phaseolus vulgaris HOM05D002706 ORTHO05D003253 4.6e-06 55.8 139 33.1
Prupe.5G100500 Prunus persica HOM05D002706 ORTHO05D003253 4.6e-06 55.8 135 33.3
vmacro12011 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 4.6e-06 55.8 136 34.6
CSS0000203 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 5.9e-06 55.5 107 36.4
ClCG01G002670 Citrullus lanatus HOM05D002706 ORTHO05D003253 5.9e-06 55.5 138 36.2
Thecc.06G055700 Theobroma cacao HOM05D002706 ORTHO05D003253 5.9e-06 55.5 135 33.3
CSS0015343 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 7.8e-06 55.1 135 34.1
CSS0015711 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 7.8e-06 55.1 135 34.1
CSS0016628 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 7.8e-06 55.1 135 34.1
CSS0035683 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 7.8e-06 55.1 135 34.1
CSS0045890 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 7.8e-06 55.1 135 34.1
HanXRQChr03g0077631 Helianthus annuus HOM05D002706 ORTHO05D003253 7.8e-06 55.1 105 35.2
Lalb_Chr06g0163611 Lupinus albus HOM05D002706 ORTHO05D003253 7.8e-06 55.1 137 35.0
Medtr1g007325 Medicago truncatula HOM05D002706 ORTHO05D003253 7.8e-06 55.1 107 37.4
Medtr1g007340 Medicago truncatula HOM05D002706 ORTHO05D003253 7.8e-06 55.1 112 39.3
Potri.010G248900 Populus trichocarpa HOM05D002706 ORTHO05D003253 7.8e-06 55.1 135 34.8


User provided reference genes

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