Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 0.0e+00 2703.7 1399 100.0
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 0.0e+00 2194.9 1455 82.3
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 0.0e+00 2189.5 1408 84.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 0.0e+00 1372.5 732 98.1
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 0.0e+00 1205.7 635 98.4
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 2.1e-301 1039.6 745 77.7
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.2e-269 934.1 754 70.6
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.5e-198 698.0 602 68.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.8e-152 544.3 769 49.7
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.6e-147 528.5 529 59.5
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-136 491.9 520 59.8
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.3e-125 455.7 745 45.6
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-123 449.1 506 55.7
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 7.4e-105 386.7 520 51.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 3.7e-88 331.3 799 37.3
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 2.5e-76 292.0 791 35.7
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 9.5e-76 290.0 788 35.8
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.2e-73 283.1 779 35.6
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 5.4e-71 274.2 787 35.1
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.6e-70 272.7 784 34.2
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 5.9e-70 270.8 780 35.3
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.5e-68 266.2 786 33.5
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 6.0e-62 244.2 646 35.9
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.2e-59 236.5 764 34.6
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.2e-59 234.2 139 88.5
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.4e-56 224.2 756 33.3
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 8.3e-56 223.8 765 34.0
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 5.1e-53 214.5 764 32.2
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.6e-51 209.5 801 29.3
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 3.1e-50 205.3 722 32.8
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 4.0e-50 204.9 730 32.5
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.2e-49 203.4 762 31.9
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 7.6e-49 200.7 757 31.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.9e-48 198.7 452 39.2
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 2.9e-48 198.7 775 29.9
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.1e-47 196.8 779 30.2
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.5e-46 191.8 784 30.5
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.5e-46 191.8 778 30.7
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.3e-45 189.9 786 29.8
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 3.9e-45 188.3 562 32.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.9e-45 188.3 792 30.9
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 5.6e-44 184.5 646 32.8
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.8e-43 182.2 344 39.8
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.8e-43 182.2 743 32.0
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 3.6e-43 181.8 694 30.8
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 4.7e-43 181.4 778 30.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.2e-41 176.8 381 37.3
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 7.6e-41 174.1 469 33.7
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 8.4e-40 170.6 442 33.9
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.4e-39 169.9 636 30.7
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.4e-39 169.9 699 29.5
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.9e-39 169.5 577 32.8
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 2.4e-39 169.1 528 32.8
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 7.1e-39 167.5 789 29.7
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.2e-38 166.8 788 28.8
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-38 166.8 157 60.5
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.5e-38 165.2 705 29.4
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.6e-37 161.0 297 39.4
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.5e-36 159.8 402 36.8
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.9e-36 159.5 382 37.2
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 3.3e-36 158.7 404 35.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 5.6e-36 157.9 219 43.8
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 7.3e-36 157.5 541 30.5
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.6e-35 156.4 708 30.2
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 6.2e-35 154.5 743 28.5
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.4e-34 153.3 757 27.2
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.0e-34 151.8 342 37.1
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 6.9e-34 151.0 759 26.9
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.0e-33 149.4 451 33.0
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 4.4e-33 148.3 621 29.0
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.7e-32 146.4 374 34.2
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.7e-32 146.4 581 30.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.2e-32 146.0 385 33.0
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.9e-32 145.6 746 27.5
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.4e-31 143.3 747 27.8
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.2e-31 142.1 129 63.6
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 5.4e-31 141.4 725 27.9
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.6e-30 139.8 249 37.8
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 4.6e-30 138.3 331 35.3
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.0e-29 137.1 286 35.3
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 8.7e-29 134.0 769 26.7
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 8.7e-29 134.0 268 37.3
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.5e-28 133.3 245 37.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.5e-28 132.5 691 29.8
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 3.3e-28 132.1 676 28.8
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.3e-28 131.7 367 35.1
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 9.6e-28 130.6 753 28.3
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.3e-27 130.2 609 30.5
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 6.2e-27 127.9 705 26.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 5.3e-26 124.8 667 29.1
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 6.9e-26 124.4 375 31.7
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.5e-25 123.2 195 40.5
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 2.0e-25 122.9 275 36.7
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 4.5e-25 121.7 367 33.5
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-24 119.4 190 40.5
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.2e-24 119.4 190 40.5
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.9e-24 119.0 273 33.0
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.9e-24 119.0 249 39.0
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 8.4e-24 117.5 250 35.6
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.2e-23 115.5 275 35.3
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 5.4e-23 114.8 135 47.4
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 9.3e-23 114.0 255 34.5
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.6e-22 113.2 320 35.6
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.6e-22 111.7 380 31.8
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 7.9e-22 110.9 310 32.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.3e-21 110.2 392 30.9
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.3e-21 109.4 260 34.6
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 3.0e-21 109.0 258 34.1
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 3.0e-21 109.0 799 24.5
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 3.9e-21 108.6 289 34.3
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.1e-21 108.2 334 33.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 6.7e-21 107.8 177 38.4
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 6.7e-21 107.8 705 24.0
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 8.7e-21 107.5 282 32.3
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 8.7e-21 107.5 174 39.1
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.5e-20 105.9 385 30.4
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.5e-20 105.9 147 43.5
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 2.5e-20 105.9 505 28.9
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 7.4e-20 104.4 487 27.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 6.2e-19 101.3 226 33.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 6.2e-19 101.3 268 30.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.4e-18 99.4 754 25.1
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.4e-18 99.4 120 41.7
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 4.0e-18 98.6 175 37.1
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 6.9e-18 97.8 249 31.3
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.5e-17 96.7 271 33.9
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 7.6e-17 94.4 178 36.0
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.3e-16 93.6 249 31.3
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 2.2e-16 92.8 116 42.2
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 6.5e-16 91.3 443 28.9
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.5e-16 91.3 148 38.5
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-15 90.1 233 34.3
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-15 89.7 382 29.3
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.9e-15 89.7 264 29.9
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.2e-14 87.0 202 34.2
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.2e-14 87.0 333 32.4
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 4.6e-14 85.1 357 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.6e-14 85.1 281 27.8
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.6e-14 85.1 157 34.4
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 6.0e-14 84.7 373 27.1
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-12 80.1 281 28.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.3e-12 78.6 61 55.7
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.4e-12 77.8 153 32.0
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.4e-12 77.8 174 31.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 9.6e-12 77.4 123 39.0
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 1.3e-11 77.0 78 52.6
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 2.1e-11 76.3 110 37.3
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.1e-11 76.3 75 44.0
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 8.2e-11 74.3 204 31.4
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 5.3e-10 71.6 385 27.5
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.2e-09 70.5 141 32.6
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 7.6e-09 67.8 108 38.9
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.5e-07 62.8 56 51.8
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 7.1e-07 61.2 546 24.4
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 7.9e-06 57.8 112 32.1


User provided reference genes

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