Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 1.9e-87 325.9 174 100.0
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.9e-87 325.9 174 100.0
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 9.0e-85 317.0 174 96.0
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.4e-82 308.9 180 92.2
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 3.5e-81 305.1 174 91.4
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 2.8e-78 295.4 173 89.6
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.2e-75 285.8 174 86.2
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 3.8e-75 285.0 174 86.2
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 1.4e-74 283.1 174 85.6
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 7.1e-74 280.8 173 84.4
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 9.3e-74 280.4 174 85.1
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 6.0e-73 277.7 174 83.9
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 8.7e-72 273.9 174 81.0
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 8.7e-72 273.9 174 82.2
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 4.3e-71 271.6 175 82.3
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 4.8e-70 268.1 174 80.5
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 4.8e-70 268.1 174 80.5
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 8.2e-70 267.3 175 80.6
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 1.4e-69 266.5 174 81.0
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 1.4e-69 266.5 174 80.5
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.8e-69 266.2 174 79.3
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 1.8e-69 266.2 174 81.0
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 1.8e-69 266.2 174 78.7
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 2.4e-69 265.8 175 81.7
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 6.9e-69 264.2 174 81.0
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 9.0e-69 263.8 174 78.7
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.2e-68 263.5 174 80.5
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 1.5e-68 263.1 174 80.5
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 2.0e-68 262.7 174 79.3
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 2.0e-68 262.7 174 77.6
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 2.6e-68 262.3 174 78.7
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 2.6e-68 262.3 174 77.0
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 3.4e-68 261.9 174 79.9
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 3.4e-68 261.9 174 79.9
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 4.5e-68 261.5 174 78.7
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 5.9e-68 261.2 175 79.4
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 2.2e-67 259.2 174 75.3
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 2.9e-67 258.8 175 79.4
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.9e-66 256.1 174 76.4
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 1.9e-66 256.1 175 77.1
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 2.5e-66 255.8 173 79.8
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 3.2e-66 255.4 175 78.9
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 4.2e-66 255.0 174 74.7
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 7.2e-66 254.2 175 77.7
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 2.7e-65 252.3 183 74.9
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 3.6e-65 251.9 195 70.3
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 3.6e-65 251.9 174 76.4
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 7.9e-65 250.8 175 74.3
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 1.8e-64 249.6 174 75.3
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 3.9e-64 248.4 174 74.1
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 3.9e-64 248.4 174 74.7
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 5.1e-64 248.1 172 75.0
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 8.7e-64 247.3 174 79.3
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 1.9e-63 246.1 174 72.4
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 7.4e-63 244.2 171 72.5
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 9.7e-63 243.8 174 73.6
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 1.3e-62 243.4 174 72.4
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 2.2e-62 242.7 174 73.0
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 1.4e-61 240.0 152 81.6
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 1.4e-61 240.0 174 70.7
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 2.4e-61 239.2 175 74.9
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 3.1e-61 238.8 146 85.6
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 5.3e-61 238.0 175 74.9
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 9.1e-61 237.3 151 82.8
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 1.2e-60 236.9 175 73.7
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 1.5e-60 236.5 169 75.1
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 2.0e-60 236.1 175 73.1
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 2.6e-60 235.7 175 74.9
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 1.0e-59 233.8 175 73.7
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 1.0e-59 233.8 175 74.3
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 1.0e-59 233.8 175 73.7
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 1.0e-59 233.8 175 72.0
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 1.7e-59 233.0 175 73.1
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 5.0e-59 231.5 175 72.6
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 5.0e-59 231.5 174 70.1
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.1e-58 230.3 146 82.9
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 4.7e-57 224.9 175 69.1
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 3.0e-56 222.2 175 72.0
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 3.0e-56 222.2 175 70.3
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 6.7e-56 221.1 146 80.1
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 5.7e-55 218.0 146 76.0
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 9.7e-55 217.2 174 71.3
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 2.8e-54 215.7 151 74.2
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 1.4e-53 213.4 174 67.8
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 1.8e-53 213.0 152 73.0
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 2.4e-53 212.6 146 78.8
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 5.3e-53 211.5 144 77.1
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 2.2e-51 206.1 152 73.7
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 3.8e-51 205.3 167 61.1
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 8.5e-51 204.1 145 75.9
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 1.1e-50 203.8 146 73.3
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 2.5e-50 202.6 174 64.9
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 5.5e-50 201.4 167 62.9
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 3.0e-48 195.7 167 62.9
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 2.6e-47 192.6 167 58.7
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 6.1e-41 171.4 167 56.3
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 5.2e-40 168.3 122 73.0
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 5.2e-40 168.3 113 77.9
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 3.7e-38 162.2 146 61.6
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 3.1e-37 159.1 113 70.8
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 4.1e-37 158.7 113 77.0
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 9.1e-37 157.5 97 85.6
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 2.0e-36 156.4 141 65.2
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 1.1e-34 150.6 125 68.0
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 1.5e-31 140.2 101 78.2
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 3.4e-31 139.0 101 72.3
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 2.2e-30 136.3 128 60.9
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 1.3e-27 127.1 161 50.3
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 5.0e-27 125.2 91 70.3
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 4.2e-26 122.1 104 64.4
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 7.2e-26 121.3 95 70.5
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 2.1e-25 119.8 167 41.3
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 1.4e-24 117.1 88 70.5
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 1.8e-24 116.7 122 54.9
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 2.3e-24 116.3 97 69.1
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 4.0e-24 115.5 161 42.9
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 3.1e-21 105.9 179 39.1
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 5.9e-20 101.7 104 58.7
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 2.3e-19 99.8 88 67.0
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 6.6e-19 98.2 123 49.6
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.9e-18 96.7 73 74.0
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 6.1e-17 91.7 51 90.2
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.3e-14 84.0 57 77.2
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 2.9e-14 82.8 88 54.5
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.6e-12 77.0 55 70.9
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 3.5e-12 75.9 62 67.7
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 3.9e-11 72.4 57 63.2
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 5.0e-11 72.0 59 64.4
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.2e-09 67.4 47 74.5
BolC1t00423H Brassica oleracea HOM05D000123 ORTHO05D009958 2.9e-06 56.2 73 43.8


User provided reference genes

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