Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 7.8e-183 643.7 324 100.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 1.3e-169 599.7 308 99.0
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 2.8e-164 582.0 317 95.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.1e-163 580.1 311 96.5
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 4.6e-151 538.1 304 93.1
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 8.2e-132 474.2 289 86.9
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-128 463.8 285 84.9
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 6.3e-124 448.0 290 80.7
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-113 414.1 287 77.0
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 5.0e-113 411.8 293 75.4
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 8.5e-113 411.0 283 76.7
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.5e-112 410.2 290 76.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 3.2e-112 409.1 293 74.7
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 4.2e-112 408.7 287 75.6
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 7.2e-112 407.9 289 74.7
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 2.7e-111 406.0 291 75.3
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 4.7e-111 405.2 293 74.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 1.0e-110 404.1 289 75.4
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 1.8e-110 403.3 282 75.9
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 4.0e-110 402.1 290 74.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 2.0e-109 399.8 289 73.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 2.6e-109 399.4 289 76.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 4.4e-109 398.7 290 75.9
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 9.7e-109 397.5 264 76.5
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 1.7e-108 396.7 285 74.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 8.3e-108 394.4 288 75.0
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 3.1e-107 392.5 289 73.0
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 2.7e-106 389.4 283 74.9
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 4.5e-106 388.7 278 74.1
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 1.0e-105 387.5 307 69.7
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 1.3e-105 387.1 278 73.7
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 1.7e-105 386.7 288 72.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 2.2e-105 386.3 298 71.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 2.9e-105 386.0 278 71.9
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 6.5e-105 384.8 288 72.2
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.5e-104 383.6 277 73.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 1.9e-104 383.3 283 71.4
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 1.9e-104 383.3 294 70.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.5e-104 382.9 275 72.0
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 5.5e-104 381.7 288 72.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 5.5e-104 381.7 278 71.6
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 5.5e-104 381.7 293 72.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 7.2e-104 381.3 276 70.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 9.4e-104 380.9 291 69.1
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 9.4e-104 380.9 291 71.5
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 2.1e-103 379.8 290 70.7
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 2.7e-103 379.4 283 73.1
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 3.6e-103 379.0 289 69.9
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 3.0e-102 375.9 277 73.6
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 3.0e-102 375.9 274 74.1
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 5.2e-102 375.2 277 71.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 6.8e-102 374.8 312 67.3
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 8.8e-102 374.4 257 75.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 1.2e-101 374.0 281 69.8
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 1.2e-101 374.0 239 80.8
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 1.5e-101 373.6 274 74.5
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 1.5e-101 373.6 283 71.4
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 2.0e-101 373.2 286 72.7
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 4.4e-101 372.1 274 72.6
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 7.5e-101 371.3 280 72.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 9.8e-101 370.9 280 72.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 9.8e-101 370.9 274 74.1
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 9.8e-101 370.9 278 73.0
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 9.8e-101 370.9 217 85.3
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 1.3e-100 370.5 278 72.7
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 1.7e-100 370.2 277 72.9
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 1.7e-100 370.2 277 73.3
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 1.7e-100 370.2 286 68.5
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.2e-100 369.8 229 80.3
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 2.2e-100 369.8 227 81.5
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 2.8e-100 369.4 276 72.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 3.7e-100 369.0 273 72.9
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 3.7e-100 369.0 287 69.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 8.3e-100 367.9 270 70.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 1.4e-99 367.1 273 71.8
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 1.8e-99 366.7 281 69.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 2.4e-99 366.3 280 71.4
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 2.4e-99 366.3 285 68.8
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 3.1e-99 365.9 282 71.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 4.1e-99 365.5 293 70.3
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 7.0e-99 364.8 282 71.3
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 1.2e-98 364.0 282 67.0
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 1.6e-98 363.6 276 71.4
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 1.6e-98 363.6 276 71.4
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 1.6e-98 363.6 290 68.3
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 2.7e-98 362.8 287 68.3
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 3.5e-98 362.5 278 71.9
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 4.5e-98 362.1 284 69.4
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 4.5e-98 362.1 216 81.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 5.9e-98 361.7 305 66.6
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 5.9e-98 361.7 276 71.4
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 5.9e-98 361.7 305 66.6
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 5.9e-98 361.7 276 71.4
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 7.7e-98 361.3 275 71.6
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 7.7e-98 361.3 286 71.3
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 1.0e-97 360.9 209 83.3
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 2.3e-97 359.8 276 70.7
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 2.9e-97 359.4 281 67.6
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.9e-97 359.4 283 71.4
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 2.9e-97 359.4 284 68.3
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 3.8e-97 359.0 268 72.0
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 6.6e-97 358.2 275 71.6
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 1.1e-96 357.5 272 71.7
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 1.5e-96 357.1 216 80.1
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 3.3e-96 355.9 273 70.7
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 9.5e-96 354.4 280 69.3
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 2.8e-95 352.8 277 69.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 2.8e-95 352.8 277 69.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 3.6e-95 352.4 251 73.3
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 3.6e-95 352.4 290 70.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 4.7e-95 352.1 217 78.8
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.0e-94 350.9 267 68.5
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 1.4e-94 350.5 283 70.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 2.3e-94 349.7 281 68.3
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 5.2e-94 348.6 280 67.1
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 1.7e-92 343.6 281 65.1
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.9e-92 342.0 232 72.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 3.2e-91 339.3 262 67.6
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.2e-90 337.4 187 85.0
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 2.3e-89 333.2 278 66.5
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.9e-88 330.1 273 65.6
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 2.4e-83 313.2 247 70.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 2.3e-81 306.6 276 61.2
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 2.8e-79 299.7 147 95.2
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 1.4e-75 287.3 178 72.5
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.2e-74 284.3 255 58.4
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.9e-72 276.9 183 69.9
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 8.9e-70 268.1 162 79.0
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.8e-66 255.0 128 91.4
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-54 218.0 219 53.9
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 3.4e-53 213.0 177 59.3
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.3e-49 200.3 116 81.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.4e-43 179.1 171 52.6
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-42 177.6 151 59.6
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 2.7e-42 176.8 113 76.1
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 5.6e-40 169.1 172 47.7
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 6.5e-36 155.6 162 46.9
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.1e-35 154.8 142 50.7
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 1.8e-33 147.5 71 94.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.3e-33 147.1 162 44.4
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.0e-25 121.7 86 66.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.3e-25 120.6 99 63.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 3.3e-24 116.7 157 50.3
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.0e-16 90.9 80 58.8
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.0e-16 90.9 96 51.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 9.7e-16 88.6 168 36.9
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.9e-09 66.6 172 39.5
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.4e-06 57.4 77 40.3


User provided reference genes

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