Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2420 Fragaria x ananassa HOM05D005044 ORTHO05D020615 2.4e-90 335.5 168 100.0
FAN07G0333 Fragaria x ananassa HOM05D005044 ORTHO05D020615 2.3e-53 212.6 129 86.0
FAN13G3123 Fragaria x ananassa HOM05D020159 ORTHO05D020615 2.1e-22 109.8 65 89.2
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 1.0e-21 107.5 115 54.8
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 1.0e-21 107.5 115 54.8
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 1.4e-21 107.1 115 54.8
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 1.4e-21 107.1 115 54.8
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 3.0e-21 105.9 114 54.4
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 4.0e-21 105.5 114 55.3
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 5.2e-21 105.1 92 63.0
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 8.8e-21 104.4 92 62.0
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 8.8e-21 104.4 90 64.4
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 2.0e-20 103.2 115 51.3
unitig_22.g5955 Utricularia gibba HOM05D005044 ORTHO05D006799 2.0e-20 103.2 92 58.7
FvH4_2g22590 Fragaria vesca HOM05D005044 ORTHO05D006799 2.6e-20 102.8 70 75.7
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.6e-20 102.8 70 75.7
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.6e-20 102.8 70 75.7
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.6e-20 102.8 70 75.7
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.6e-20 102.8 70 75.7
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 2.6e-20 102.8 114 53.5
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 2.6e-20 102.8 114 53.5
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 2.6e-20 102.8 114 53.5
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 3.4e-20 102.4 90 62.2
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 3.4e-20 102.4 90 62.2
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 3.4e-20 102.4 90 62.2
Potri.005G217400 Populus trichocarpa HOM05D005044 ORTHO05D006799 4.4e-20 102.1 113 54.0
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 5.7e-20 101.7 114 53.5
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 7.5e-20 101.3 139 46.8
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 7.5e-20 101.3 101 57.4
Manes.01G202300 Manihot esculenta HOM05D005044 ORTHO05D006799 7.5e-20 101.3 113 54.0
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 7.5e-20 101.3 113 54.0
Cfa002318 Carpinus fangiana HOM05D005044 ORTHO05D006799 9.8e-20 100.9 114 52.6
COL.COLO4_06089 Corchorus olitorius HOM05D005044 ORTHO05D006799 9.8e-20 100.9 101 57.4
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 9.8e-20 100.9 90 61.1
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 1.3e-19 100.5 101 57.4
Gohir.D11G132200 Gossypium hirsutum HOM05D005044 ORTHO05D006799 1.3e-19 100.5 101 57.4
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 1.3e-19 100.5 92 60.9
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 1.7e-19 100.1 101 56.4
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 1.7e-19 100.1 88 61.4
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 1.7e-19 100.1 88 61.4
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 1.7e-19 100.1 101 57.4
Ca_08641_v3 Cicer arietinum L. HOM05D005044 ORTHO05D006799 2.2e-19 99.8 142 46.5
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 2.2e-19 99.8 114 52.6
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 2.2e-19 99.8 101 54.5
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 2.8e-19 99.4 114 53.5
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 2.8e-19 99.4 114 51.8
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 3.7e-19 99.0 101 57.4
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 3.7e-19 99.0 101 56.4
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 3.7e-19 99.0 70 71.4
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 4.9e-19 98.6 90 62.2
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 4.9e-19 98.6 101 57.4
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 4.9e-19 98.6 70 71.4
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 4.9e-19 98.6 101 55.4
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 6.3e-19 98.2 70 70.0
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 6.3e-19 98.2 90 60.0
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 8.3e-19 97.8 101 53.5
Peaxi162Scf01826g00015 Petunia axillaris HOM05D005044 ORTHO05D006799 8.3e-19 97.8 101 56.4
Sabra02G0036900 Salix brachista HOM05D005044 ORTHO05D006799 8.3e-19 97.8 96 58.3
vmacro14879 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 8.3e-19 97.8 84 64.3
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 1.1e-18 97.4 70 71.4
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 1.1e-18 97.4 101 55.4
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.4e-18 97.1 101 55.4
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 1.4e-18 97.1 113 52.2
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 1.4e-18 97.1 101 56.4
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 1.4e-18 97.1 101 56.4
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 1.4e-18 97.1 149 47.0
HPP92_024856 Vanilla planifolia HOM05D005044 ORTHO05D006799 1.4e-18 97.1 70 70.0
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 1.8e-18 96.7 70 70.0
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 1.8e-18 96.7 101 54.5
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 1.8e-18 96.7 113 51.3
Nitab4.5_0000393g0110 Nicotiana tabacum HOM05D005044 ORTHO05D006799 1.8e-18 96.7 70 71.4
Nitab4.5_0004093g0010 Nicotiana tabacum HOM05D005044 ORTHO05D006799 1.8e-18 96.7 70 71.4
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 1.8e-18 96.7 115 49.6
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.4e-18 96.3 131 47.3
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 2.4e-18 96.3 92 54.3
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 2.4e-18 96.3 90 58.9
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 3.1e-18 95.9 113 52.2
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 3.1e-18 95.9 70 71.4
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 3.1e-18 95.9 70 70.0
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 3.1e-18 95.9 101 52.5
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 4.1e-18 95.5 149 43.6
AUR62011952 Chenopodium quinoa HOM05D005044 ORTHO05D006799 7.0e-18 94.7 70 71.4
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 7.0e-18 94.7 70 71.4
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 7.0e-18 94.7 101 54.5
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 7.0e-18 94.7 70 67.1
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 9.2e-18 94.4 115 49.6
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 9.2e-18 94.4 70 70.0
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 1.2e-17 94.0 70 67.1
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 1.2e-17 94.0 104 55.8
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 1.2e-17 94.0 51 90.2
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 1.6e-17 93.6 68 70.6
EL10Ac5g10465 Beta vulgaris HOM05D005044 ORTHO05D006799 2.0e-17 93.2 70 70.0
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.7e-17 92.8 71 64.8
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 2.7e-17 92.8 101 53.5
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 2.7e-17 92.8 70 68.6
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 4.5e-17 92.0 68 70.6
CARHR164510 Cardamine hirsuta HOM05D005044 ORTHO05D006799 5.9e-17 91.7 68 70.6
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 5.9e-17 91.7 131 48.1
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 5.9e-17 91.7 92 51.1
AagrBONN_evm.TU.Sc2ySwM_117.1037 Anthoceros agrestis HOM05D005044 ORTHO05D006799 7.7e-17 91.3 70 64.3
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 7.7e-17 91.3 68 70.6
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 7.7e-17 91.3 68 70.6
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 7.7e-17 91.3 92 57.6
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.0e-16 90.9 71 69.0
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 1.0e-16 90.9 68 69.1
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 1.3e-16 90.5 70 65.7
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 1.7e-16 90.1 113 47.8
A04p05170 Brassica napus HOM05D005044 ORTHO05D006799 2.3e-16 89.7 97 53.6
BraA04t16227Z Brassica rapa HOM05D005044 ORTHO05D006799 2.3e-16 89.7 97 53.6
FAN09G0770 Fragaria x ananassa HOM05D020159 ORTHO05D020615 2.3e-16 89.7 148 41.9
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 2.9e-16 89.4 68 67.6
BcaC02g09052 Brassica carinata HOM05D005044 ORTHO05D006799 2.9e-16 89.4 97 53.6
C04p37870 Brassica napus HOM05D005044 ORTHO05D006799 3.8e-16 89.0 108 49.1
BolC4t25361H Brassica oleracea HOM05D005044 ORTHO05D006799 3.8e-16 89.0 108 49.1
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 5.0e-16 88.6 75 62.7
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 5.0e-16 88.6 75 62.7
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 5.0e-16 88.6 75 62.7
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 5.0e-16 88.6 75 62.7
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 5.0e-16 88.6 75 62.7
CBR_g46433 Chara braunii HOM05D005044 ORTHO05D006799 5.0e-16 88.6 70 61.4
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 8.6e-16 87.8 125 45.6
BcaC04g22409 Brassica carinata HOM05D005044 ORTHO05D000065 3.3e-15 85.9 76 61.8
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 3.3e-15 85.9 70 61.4
BolC9t54871H Brassica oleracea HOM05D005044 ORTHO05D006799 7.3e-15 84.7 78 57.7
FvH4_6g22830 Fragaria vesca HOM05D020159 ORTHO05D020615 2.8e-14 82.8 44 88.6
C09p19690 Brassica napus HOM05D005044 ORTHO05D006799 3.6e-14 82.4 76 60.5
FAN18G3950 Fragaria x ananassa HOM05D020159 ORTHO05D020615 4.7e-14 82.0 117 41.9
GSVIVG01000713001 Vitis vinifera HOM05D005044 ORTHO05D006799 1.0e-13 80.9 54 64.8
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 6.8e-13 78.2 70 54.3
Cre06.g256200 Chlamydomonas reinhardtii HOM05D005044 ORTHO05D006799 4.4e-12 75.5 71 54.9
PRCOL_00003272 Prasinoderma coloniale HOM05D005044 ORTHO05D006799 7.0e-10 68.2 68 48.5
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 1.6e-09 67.0 47 70.2
Cfa021827 Carpinus fangiana HOM05D005044 ORTHO05D006799 2.3e-08 63.2 52 55.8
FAN11G0844 Fragaria x ananassa HOM05D020159 ORTHO05D020615 1.6e-06 57.0 48 62.5
FAN18G2760 Fragaria x ananassa HOM05D020159 ORTHO05D201912 2.1e-06 56.6 48 60.4


User provided reference genes

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