Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 0.0e+00 1332.0 665 100.0
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 0.0e+00 1324.3 665 99.4
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 0.0e+00 1298.5 665 97.3
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 0.0e+00 1224.2 669 90.6
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 0.0e+00 1123.2 580 95.9
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.4e-303 1045.8 669 77.9
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 4.8e-280 967.6 582 81.4
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 3.7e-272 941.4 663 71.8
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 2.0e-270 935.6 636 71.7
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.5e-270 934.9 660 71.1
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.2e-267 926.4 656 69.5
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.0e-266 923.3 638 71.2
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 1.2e-265 919.8 580 77.8
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 2.6e-265 918.7 661 69.1
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 5.8e-265 917.5 638 70.5
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 8.3e-264 913.7 664 70.6
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.2e-263 911.8 667 68.4
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 2.0e-262 909.1 675 67.9
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 3.5e-262 908.3 663 68.8
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 6.2e-259 897.5 669 67.6
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 6.2e-259 897.5 670 67.5
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 5.2e-258 894.4 664 67.5
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 2.0e-257 892.5 672 65.9
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 2.6e-257 892.1 672 66.5
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.3e-256 889.8 665 68.9
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.9e-256 888.6 668 66.6
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.7e-256 888.3 672 65.8
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.0e-253 880.2 674 65.3
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 2.3e-250 869.0 683 65.2
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.0e-250 868.2 672 64.7
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.4e-247 859.8 658 67.3
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 5.4e-247 857.8 670 65.4
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 1.6e-246 856.3 665 66.0
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 1.0e-245 853.6 667 66.0
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.0e-245 853.6 657 66.1
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 2.3e-245 852.4 668 65.3
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.1e-244 850.1 634 66.4
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 1.9e-244 849.4 633 65.6
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 7.3e-244 847.4 671 65.4
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 9.5e-244 847.0 665 65.3
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.2e-243 846.7 640 66.9
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.2e-243 846.7 587 69.0
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.6e-243 845.1 684 63.0
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 3.6e-243 845.1 637 66.4
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 4.7e-243 844.7 666 64.1
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 6.2e-243 844.3 671 64.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.1e-242 843.6 657 66.4
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.8e-242 842.8 659 65.1
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 3.1e-242 842.0 668 62.6
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 3.1e-242 842.0 653 65.5
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 5.2e-242 841.3 654 63.6
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 8.9e-242 840.5 670 65.1
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 2.2e-240 835.9 656 64.9
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 2.2e-240 835.9 683 61.8
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 4.9e-240 834.7 667 63.9
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.4e-240 834.3 664 64.0
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 2.4e-239 832.4 668 63.6
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 5.4e-239 831.2 654 64.4
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 2.1e-238 829.3 639 65.4
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 1.3e-237 826.6 666 63.7
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 5.1e-237 824.7 664 63.4
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 3.3e-236 822.0 669 64.4
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 4.3e-236 821.6 657 62.9
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 7.3e-236 820.8 666 63.8
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 9.6e-236 820.5 668 63.5
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.2e-235 820.1 667 62.7
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 8.1e-235 817.4 660 63.3
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 8.1e-235 817.4 668 62.9
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.1e-234 817.0 663 62.0
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 9.0e-234 813.9 667 62.2
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 2.6e-233 812.4 668 61.5
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 9.9e-233 810.4 663 62.9
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.7e-232 809.7 660 62.6
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 3.8e-232 808.5 657 63.2
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 6.4e-232 807.7 662 62.8
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 5.4e-231 804.7 669 62.3
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 9.3e-231 803.9 662 62.4
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.2e-230 803.5 662 62.4
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 1.6e-230 803.1 660 62.1
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 6.0e-230 801.2 660 62.0
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 6.0e-230 801.2 659 61.9
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 3.0e-229 798.9 662 61.8
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 4.3e-228 795.0 659 62.2
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 4.3e-228 795.0 660 62.1
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 8.1e-227 790.8 662 62.2
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.1e-226 790.4 660 61.8
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.2e-225 786.9 662 60.4
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 3.2e-223 778.9 658 60.3
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 2.1e-222 776.2 628 63.5
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 2.7e-222 775.8 628 62.3
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 2.7e-222 775.8 638 62.4
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 8.7e-221 770.8 668 58.5
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 3.7e-219 765.4 639 62.3
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 8.1e-219 764.2 664 58.9
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 2.1e-214 749.6 662 58.6
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 2.7e-214 749.2 674 59.5
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 5.3e-210 734.9 646 56.8
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 6.0e-206 721.5 700 54.7
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.1e-204 717.2 607 60.6
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.9e-204 716.5 564 63.5
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.8e-186 656.8 548 59.5
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 4.1e-178 629.0 488 61.7
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.6e-174 615.9 579 54.6
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 4.7e-166 589.0 504 60.3
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 8.3e-163 578.2 691 46.0
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 4.2e-159 565.8 576 53.8
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.7e-156 555.4 588 51.2
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 8.0e-142 508.4 429 57.1
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 5.4e-130 469.2 455 52.1
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.9e-127 460.7 393 63.1
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.3e-127 459.9 637 43.2
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.1e-126 457.2 645 42.3
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 2.7e-121 440.3 771 36.6
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 2.8e-118 430.3 393 55.5
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 7.1e-106 389.0 562 41.3
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.7e-94 350.1 195 82.1
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.0e-80 303.9 323 51.4
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 4.3e-79 300.1 275 56.0
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.2e-73 282.0 224 65.6
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 5.1e-72 276.6 645 32.2
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 2.2e-70 271.2 226 58.8
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 4.8e-70 270.0 300 48.7
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 9.7e-63 245.7 410 43.7
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.4e-61 241.9 657 30.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.6e-60 237.7 657 30.4
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 2.6e-55 221.1 709 29.1
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.0e-47 194.9 279 43.4
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.8e-47 192.6 274 43.4
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 2.4e-45 188.0 145 68.3
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 1.7e-43 181.8 119 74.8
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.7e-43 181.8 175 58.9
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 8.6e-43 179.5 145 57.9
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 5.7e-39 166.8 123 69.9
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 1.3e-35 155.6 112 65.2
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.5e-34 152.1 161 51.6
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 9.5e-34 149.4 167 50.3
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-30 138.3 236 38.6
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.4e-30 136.7 236 38.1
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.4e-30 136.7 236 38.1
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.4e-30 136.7 236 38.1
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.4e-30 136.7 236 38.1
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.4e-29 135.6 183 39.9
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 4.3e-26 124.0 260 35.4
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 2.8e-25 121.3 101 64.4
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.3e-24 118.2 170 42.9
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.0e-24 117.5 170 42.9
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.2e-24 117.1 170 42.4
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.8e-24 116.7 170 42.9
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 1.4e-21 109.0 205 34.6
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 4.7e-17 94.0 62 77.4
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 4.0e-16 90.9 62 75.8
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 7.3e-10 70.1 50 60.0
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 4.7e-09 67.4 48 62.5
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 8.1e-09 66.6 40 72.5
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 1.1e-08 66.2 75 48.0


User provided reference genes

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