Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 5.0e-117 424.5 219 100.0
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 1.4e-114 416.4 219 98.6
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 8.6e-109 397.1 217 94.5
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 4.7e-107 391.3 219 92.7
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 7.1e-95 350.9 220 84.1
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 1.9e-92 342.8 217 83.9
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 8.1e-91 337.4 209 83.7
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 2.0e-89 332.8 219 78.1
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.9e-88 328.9 217 77.4
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 1.4e-87 326.6 216 77.3
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 1.4e-87 326.6 219 76.7
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 7.1e-87 324.3 219 75.3
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 2.1e-86 322.8 219 76.3
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 5.1e-85 318.2 218 76.6
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 6.6e-85 317.8 214 75.2
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 1.5e-84 316.6 227 74.0
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 1.5e-84 316.6 219 74.4
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.9e-84 316.2 217 75.1
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 2.5e-84 315.8 219 75.8
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 5.6e-84 314.7 206 76.7
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 5.6e-84 314.7 217 75.6
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 1.3e-83 313.5 217 75.6
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 2.1e-83 312.8 247 68.4
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 2.1e-83 312.8 214 72.9
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 2.8e-83 312.4 223 75.3
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 3.6e-83 312.0 219 74.0
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 8.1e-83 310.8 223 74.9
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.8e-82 309.7 214 72.9
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 1.8e-82 309.7 217 75.1
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 2.4e-82 309.3 214 72.9
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 5.3e-82 308.1 217 73.7
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 6.9e-82 307.8 216 70.8
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 1.2e-81 307.0 219 73.1
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 5.8e-81 304.7 221 71.9
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 1.7e-80 303.1 228 70.6
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 3.8e-80 302.0 218 70.6
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 3.8e-80 302.0 215 71.6
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 3.8e-80 302.0 223 72.6
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 6.4e-80 301.2 219 73.5
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 6.4e-80 301.2 219 74.0
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 6.4e-80 301.2 218 71.1
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 6.4e-80 301.2 219 73.1
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 8.4e-80 300.8 219 72.6
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 8.4e-80 300.8 221 70.6
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 8.4e-80 300.8 220 69.1
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 1.1e-79 300.4 216 71.8
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 1.1e-79 300.4 242 66.1
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 2.4e-79 299.3 197 75.6
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 3.2e-79 298.9 219 72.6
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 3.2e-79 298.9 220 72.3
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 9.3e-79 297.4 219 69.9
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 1.2e-78 297.0 217 69.1
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.2e-78 297.0 219 69.4
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 1.6e-78 296.6 223 68.6
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 2.1e-78 296.2 223 70.9
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 1.0e-77 293.9 222 70.3
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 1.7e-77 293.1 223 71.7
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.7e-77 293.1 219 70.3
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 3.9e-77 292.0 202 72.8
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 5.6e-76 288.1 219 67.6
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.1e-75 286.2 219 70.3
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.8e-75 285.8 219 69.4
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 1.2e-73 280.4 215 69.3
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.5e-73 280.0 224 64.7
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 6.4e-72 274.6 215 64.2
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 6.4e-72 274.6 219 68.0
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 6.4e-72 274.6 167 82.0
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 1.4e-71 273.5 217 69.6
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 7.1e-71 271.2 220 68.2
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 2.7e-70 269.2 218 63.8
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 3.5e-70 268.9 167 78.4
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 6.0e-70 268.1 167 80.2
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 7.9e-70 267.7 234 60.3
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 7.9e-70 267.7 183 72.7
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 2.3e-69 266.2 208 67.8
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 3.0e-69 265.8 219 61.6
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 1.1e-68 263.8 193 71.0
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 1.5e-68 263.5 171 77.2
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 4.8e-67 258.5 167 77.2
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.1e-66 257.3 213 62.9
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 2.5e-63 246.1 155 79.4
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 4.6e-62 241.9 179 66.5
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 8.7e-61 237.7 218 60.6
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 3.7e-59 232.3 157 77.1
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 1.2e-57 227.3 138 79.7
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.7e-56 223.4 226 55.3
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 1.9e-55 219.9 219 53.0
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 3.7e-51 205.7 140 69.3
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 6.3e-51 204.9 154 72.1
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 2.5e-47 193.0 147 72.1
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 3.2e-47 192.6 147 71.4
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 5.5e-47 191.8 219 52.5
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 2.2e-43 179.9 136 66.2
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 7.2e-31 138.3 95 76.8
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.4e-26 123.2 80 81.2
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.4e-26 123.2 80 81.2
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 6.1e-22 108.6 71 76.1
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 6.1e-22 108.6 214 36.4
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 1.8e-18 97.1 59 76.3
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 8.5e-16 88.2 78 62.8
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 2.8e-14 83.2 73 49.3
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 6.1e-14 82.0 186 34.9
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 2.0e-12 77.0 157 36.9
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.8e-06 56.6 37 73.0
CDE04G2918 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 4.7e-06 55.8 43 60.5


User provided reference genes

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