Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.6e-118 429.5 221 100.0
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.6e-118 429.5 221 100.0
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 5.1e-109 397.9 215 95.3
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.1e-92 343.6 233 79.8
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 9.0e-90 334.0 223 83.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.9e-87 326.2 231 77.5
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 4.1e-82 308.5 217 81.6
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.5e-79 299.3 234 70.1
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.6e-78 296.6 224 69.6
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.1e-78 296.2 247 71.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.3e-77 292.7 226 69.9
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 6.7e-77 291.2 231 69.7
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 8.8e-77 290.8 225 70.7
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.3e-76 288.9 223 71.7
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 5.7e-76 288.1 229 69.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.2e-75 286.2 224 68.3
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 3.7e-75 285.4 220 69.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 4.8e-75 285.0 242 67.4
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.4e-74 283.5 189 78.3
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.4e-74 283.5 189 78.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.4e-74 283.5 224 68.3
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.8e-74 283.1 173 84.4
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.4e-74 282.7 188 78.7
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.1e-74 282.3 191 77.0
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 4.1e-74 282.0 199 72.9
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 6.9e-74 281.2 184 78.8
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 6.9e-74 281.2 214 71.5
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 6.9e-74 281.2 229 68.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 9.1e-74 280.8 184 79.3
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 9.1e-74 280.8 214 71.0
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.2e-73 280.4 226 66.4
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.0e-73 279.6 226 68.6
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.6e-73 279.3 173 82.1
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.9e-73 278.1 186 78.0
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.9e-73 278.1 186 78.0
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 5.9e-73 278.1 186 78.0
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 5.9e-73 278.1 211 67.8
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.2e-72 276.2 226 67.3
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.1e-71 273.9 228 65.4
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 1.1e-71 273.9 163 84.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.4e-71 273.5 182 74.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.9e-71 273.1 182 74.2
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.5e-71 272.7 173 78.6
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.5e-71 272.7 180 76.1
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 4.2e-71 271.9 186 73.7
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.2e-71 271.9 213 69.0
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 7.2e-71 271.2 172 80.2
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 7.2e-71 271.2 182 74.2
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 7.2e-71 271.2 189 75.1
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 9.4e-71 270.8 193 72.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.2e-70 270.4 173 78.0
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.1e-70 269.6 162 80.9
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 3.6e-70 268.9 192 73.4
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 4.7e-70 268.5 196 73.0
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.7e-70 268.5 189 72.5
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.7e-70 268.5 240 63.8
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 6.1e-70 268.1 182 73.1
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 7.9e-70 267.7 173 77.5
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.0e-69 267.3 173 76.3
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.4e-69 266.9 215 68.8
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.8e-69 266.5 165 81.2
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.8e-69 266.5 165 81.2
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 2.3e-69 266.2 214 65.0
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.0e-69 265.8 215 66.5
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.9e-69 265.4 182 73.6
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 5.2e-69 265.0 206 69.4
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 6.7e-69 264.6 200 68.5
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 8.8e-69 264.2 182 73.6
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 8.8e-69 264.2 182 73.6
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 8.8e-69 264.2 223 65.0
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 8.8e-69 264.2 220 65.9
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.1e-68 263.8 182 73.6
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.5e-68 263.5 183 72.7
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 1.5e-68 263.5 182 73.6
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 1.5e-68 263.5 183 72.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.5e-68 263.5 223 65.5
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-68 262.7 186 73.1
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.3e-68 262.3 161 78.9
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 3.3e-68 262.3 209 67.0
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.4e-68 261.9 186 72.0
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.3e-67 260.4 186 71.0
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.8e-67 259.2 199 67.3
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.8e-67 259.2 215 64.7
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.8e-67 258.5 201 65.7
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.8e-66 256.5 170 74.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.8e-66 256.5 201 65.2
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 4.1e-66 255.4 198 65.2
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 5.3e-66 255.0 165 76.4
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.3e-66 255.0 185 73.0
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 5.3e-66 255.0 198 65.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 5.3e-66 255.0 190 71.6
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 7.0e-66 254.6 157 79.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-65 253.4 158 80.4
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.0e-65 253.1 158 80.4
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 3.5e-65 252.3 203 66.5
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 3.5e-65 252.3 229 62.0
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.5e-65 252.3 178 70.2
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.5e-65 252.3 185 71.9
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 3.5e-65 252.3 243 60.5
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 3.8e-64 248.8 219 61.6
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 8.5e-64 247.7 228 59.6
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 8.5e-64 247.7 228 61.0
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.1e-63 247.3 170 73.5
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.9e-63 246.5 173 71.1
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.9e-63 246.5 228 61.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 2.5e-63 246.1 228 61.0
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 3.2e-63 245.7 146 84.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 3.2e-63 245.7 180 71.7
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 7.2e-63 244.6 224 58.5
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.6e-62 243.4 170 71.2
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.1e-62 243.0 165 73.3
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 6.1e-62 241.5 226 58.4
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.4e-61 240.4 228 57.5
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 3.0e-61 239.2 132 90.2
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.0e-60 236.5 139 81.3
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 4.4e-60 235.3 157 73.9
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 5.7e-60 235.0 173 72.3
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 7.5e-60 234.6 240 55.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.7e-59 233.4 177 68.9
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.2e-59 231.1 213 59.2
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 7.0e-58 228.0 210 58.6
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 9.1e-58 227.6 140 81.4
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 2.0e-57 226.5 139 77.7
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 2.7e-57 226.1 133 83.5
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 4.5e-57 225.3 158 69.0
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.0e-56 224.2 158 70.9
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.7e-56 223.4 159 69.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 5.0e-56 221.9 164 67.7
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 5.0e-56 221.9 157 67.5
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 9.4e-55 217.6 127 81.9
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 5.2e-53 211.8 127 80.3
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 4.8e-51 205.3 139 74.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 6.3e-51 204.9 178 65.2
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-47 194.1 142 67.6
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.5e-47 193.7 141 63.8
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.5e-47 191.0 210 51.9
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 2.1e-46 189.9 154 64.9
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 8.0e-46 188.0 177 62.1
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 5.2e-45 185.3 139 69.8
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 8.8e-45 184.5 97 93.8
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 8.8e-45 184.5 190 58.4
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 3.4e-44 182.6 158 58.9
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.6e-41 173.7 106 81.1
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 6.6e-40 168.3 97 78.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.6e-38 163.7 163 56.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.8e-38 162.9 148 55.4
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 2.0e-33 146.7 117 65.0
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.5e-31 140.6 132 50.0
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-31 140.6 77 90.9
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.8e-30 136.3 133 57.1
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 6.2e-30 135.2 77 84.4
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.8e-29 133.7 74 83.8
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.3e-29 133.3 167 49.7
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.2e-29 132.1 167 49.1
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.4e-28 129.4 94 70.2
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 3.5e-25 119.4 64 90.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 9.5e-23 111.3 110 53.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 5.2e-21 105.5 121 48.8
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 4.4e-20 102.4 96 55.2
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 4.4e-20 102.4 72 73.6
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 6.0e-17 92.0 70 64.3
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 3.0e-16 89.7 47 89.4
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 7.3e-15 85.1 43 93.0
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-14 82.4 128 45.3
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-13 80.9 42 90.5
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.8e-13 80.5 42 88.1
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.7e-11 73.9 125 42.4
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 8.4e-11 71.6 38 84.2
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 4.6e-09 65.9 171 28.7
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.8e-06 56.6 35 80.0
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 4.7e-06 55.8 69 49.3
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-06 55.8 32 84.4
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-06 55.8 32 84.4


User provided reference genes

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