Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2160 Fragaria x ananassa HOM05D039077 ORTHO05D000637 6.6e-85 317.8 219 100.0
FvH4_2g30750 Fragaria vesca HOM05D039077 ORTHO05D045508 5.2e-37 158.7 144 96.5
FAN15G1139 Fragaria x ananassa HOM05D000588 ORTHO05D000637 1.5e-36 157.1 147 63.9
FAN27G1797 Fragaria x ananassa HOM05D000588 ORTHO05D000637 3.3e-36 156.0 147 63.9
FAN20G1636 Fragaria x ananassa HOM05D000588 ORTHO05D000637 4.4e-36 155.6 147 63.3
RcHm_v2.0_Chr6g0312141 Rosa chinensis HOM05D000588 ORTHO05D000637 7.7e-33 144.8 135 63.7
FvH4_2g30760 Fragaria vesca HOM05D000588 ORTHO05D000637 3.2e-31 139.4 147 59.2
FAN24G1622 Fragaria x ananassa HOM05D000588 ORTHO05D000637 4.2e-31 139.0 147 58.5
RcHm_v2.0_Chr6g0312161 Rosa chinensis HOM05D000588 ORTHO05D000637 5.3e-26 122.1 101 65.3
FAN15G0573 Fragaria x ananassa HOM05D039077 ORTHO05D045508 1.0e-24 117.9 72 90.3
FvH4_2g30730 Fragaria vesca HOM05D000588 ORTHO05D000637 4.2e-23 112.5 88 65.9
FAN15G2990 Fragaria x ananassa HOM05D000588 ORTHO05D000637 4.2e-23 112.5 88 65.9
FAN20G1938 Fragaria x ananassa HOM05D000588 ORTHO05D000637 4.2e-23 112.5 88 65.9
FAN27G0906 Fragaria x ananassa HOM05D000588 ORTHO05D000637 4.2e-23 112.5 88 65.9
FAN24G3250 Fragaria x ananassa HOM05D000588 ORTHO05D000637 1.2e-22 110.9 88 64.8
Prupe.1G461800 Prunus persica HOM05D000588 ORTHO05D000637 3.2e-15 86.3 80 53.8
MD08G1134300 Malus domestica HOM05D000588 ORTHO05D000637 2.3e-13 80.1 94 44.7
MD08G1131800 Malus domestica HOM05D000588 ORTHO05D000637 5.2e-13 79.0 91 50.5
MD15G1109500 Malus domestica HOM05D000588 ORTHO05D000637 6.8e-13 78.6 92 41.3
MD15G1109400 Malus domestica HOM05D000588 ORTHO05D000637 2.0e-12 77.0 97 50.5
QL12p024761 Quercus lobata HOM05D000588 ORTHO05D000637 2.0e-12 77.0 107 44.9
Prupe.1G461700 Prunus persica HOM05D000588 ORTHO05D000637 5.7e-12 75.5 98 45.9
TWI59G0688 Tripterygium wilfordii HOM05D000588 ORTHO05D000637 5.7e-12 75.5 107 43.0
Eucgr.C02101 Eucalyptus grandis HOM05D000588 ORTHO05D000637 1.3e-11 74.3 77 54.5
ClCG05G017460 Citrullus lanatus HOM05D000588 ORTHO05D000637 2.2e-11 73.6 97 45.4
CANSAT35G1066 Cannabis sativa HOM05D000588 ORTHO05D000637 2.8e-11 73.2 111 40.5
Haze_21710 Corylus avellana HOM05D000588 ORTHO05D000637 2.8e-11 73.2 84 50.0
Sc09g0007990 Simmondsia chinensis HOM05D000588 ORTHO05D000637 2.8e-11 73.2 83 49.4
PSO170G1176 Papaver somniferum HOM05D000588 ORTHO05D000637 4.9e-11 72.4 92 43.5
FAN15G1713 Fragaria x ananassa HOM05D000588 ORTHO05D000637 6.3e-11 72.0 102 40.2
FvH4_2g30720 Fragaria vesca HOM05D000588 ORTHO05D000637 8.3e-11 71.6 102 40.2
Sed0011221 Sechium edule HOM05D000588 ORTHO05D000637 8.3e-11 71.6 134 38.1
CiPaw.07G214200 Carya illinoinensis HOM05D000588 ORTHO05D000637 1.1e-10 71.2 82 50.0
PSO063G3851 Papaver somniferum HOM05D000588 ORTHO05D000637 1.1e-10 71.2 69 55.1
Aqoxy7G03049 Aquilegia oxysepala HOM05D000588 ORTHO05D000637 1.8e-10 70.5 121 37.2
PGR042G2279 Punica granatum HOM05D000588 ORTHO05D000637 1.8e-10 70.5 93 43.0
Thecc.06G133300 Theobroma cacao HOM05D000588 ORTHO05D000637 1.8e-10 70.5 97 43.3
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 2.4e-10 70.1 125 38.4
TAR383G0915 Trochodendron aralioides HOM05D000588 ORTHO05D000637 2.4e-10 70.1 79 48.1
CAN.G137.60 Capsicum annuum HOM05D000588 ORTHO05D000637 3.1e-10 69.7 109 42.2
MELO3C003641.2 Cucumis melo HOM05D000588 ORTHO05D000637 3.1e-10 69.7 101 42.6
Potri.001G037800 Populus trichocarpa HOM05D000588 ORTHO05D000637 3.1e-10 69.7 95 44.2
TPR.G12060 Trifolium pratense HOM05D000588 ORTHO05D000637 3.1e-10 69.7 90 44.4
TWI32G1312 Tripterygium wilfordii HOM05D000588 ORTHO05D000637 7.0e-10 68.6 95 47.4
CsaV3_3G046960 Cucumis sativus L. HOM05D000588 ORTHO05D000637 9.2e-10 68.2 113 39.8
Haze_02619 Corylus avellana HOM05D000588 ORTHO05D000637 1.2e-09 67.8 84 48.8
MELO3C011198.2 Cucumis melo HOM05D000588 ORTHO05D000637 1.6e-09 67.4 111 39.6
Peaxi162Scf00045g00165 Petunia axillaris HOM05D000588 ORTHO05D000637 2.0e-09 67.0 92 42.4
Ca_12877_v3 Cicer arietinum L. HOM05D000588 ORTHO05D000637 3.5e-09 66.2 72 44.4
FAN20G2865 Fragaria x ananassa HOM05D000588 ORTHO05D000637 4.5e-09 65.9 85 45.9
Hma1.2p1_1561F.1_g290710 Hydrangea macrophylla HOM05D000588 ORTHO05D000637 4.5e-09 65.9 83 45.8
BcaC01g04027 Brassica carinata HOM05D000588 ORTHO05D000637 7.8e-09 65.1 104 40.4
C03p45820 Brassica napus HOM05D000588 ORTHO05D000637 7.8e-09 65.1 104 40.4
BolC3t16857H Brassica oleracea HOM05D000588 ORTHO05D000637 7.8e-09 65.1 104 40.4
Dinv18140 Davidia involucrata HOM05D000588 ORTHO05D000637 7.8e-09 65.1 81 48.1
Peaxi162Scf00045g00167 Petunia axillaris HOM05D000588 ORTHO05D000637 7.8e-09 65.1 92 41.3
Carub.0003s1201 Capsella rubella HOM05D000588 ORTHO05D000637 1.3e-08 64.3 116 38.8
Gohir.A06G142000 Gossypium hirsutum HOM05D000588 ORTHO05D000637 1.3e-08 64.3 93 43.0
Gohir.D06G147700 Gossypium hirsutum HOM05D000588 ORTHO05D000637 1.3e-08 64.3 93 43.0
Gorai.010G172200 Gossypium raimondii HOM05D000588 ORTHO05D000637 1.3e-08 64.3 93 43.0
Manes.04G098500 Manihot esculenta HOM05D000588 ORTHO05D000637 1.7e-08 63.9 120 39.2
Solyc08g006295.1 Solanum lycopersicum HOM05D000588 ORTHO05D000637 1.7e-08 63.9 85 42.4
Sopen08g002280 Solanum pennellii HOM05D000588 ORTHO05D000637 1.7e-08 63.9 85 42.4
Nitab4.5_0000555g0120 Nicotiana tabacum HOM05D000588 ORTHO05D000637 2.3e-08 63.5 92 40.2
Sabra06G0214000 Salix brachista HOM05D000588 ORTHO05D000637 2.3e-08 63.5 88 42.0
ClCG08G012750 Citrullus lanatus HOM05D000588 ORTHO05D000637 2.9e-08 63.2 83 44.6
SGA_v2.0_scaffold27G11682 Striga asiatica HOM05D000588 ORTHO05D000637 2.9e-08 63.2 91 42.9
A03p37750 Brassica napus HOM05D000588 ORTHO05D000637 3.8e-08 62.8 104 39.4
BraA03t12930Z Brassica rapa HOM05D000588 ORTHO05D000637 3.8e-08 62.8 104 39.4
CsaV3_2G031480 Cucumis sativus L. HOM05D000588 ORTHO05D000637 3.8e-08 62.8 83 41.0
PGR031G2991 Punica granatum HOM05D000588 ORTHO05D000637 3.8e-08 62.8 71 47.9
BcaB04g18714 Brassica carinata HOM05D000588 ORTHO05D000637 5.0e-08 62.4 106 36.8
CSS0049697 Camellia sinensis var. sinensis HOM05D000588 ORTHO05D000637 5.0e-08 62.4 97 42.3
unitig_52.g17034 Utricularia gibba HOM05D000588 ORTHO05D000637 5.0e-08 62.4 119 36.1
BcaC05g29250 Brassica carinata HOM05D000588 ORTHO05D000637 6.6e-08 62.0 106 39.6
A05p36840 Brassica napus HOM05D000588 ORTHO05D000637 6.6e-08 62.0 106 39.6
BNapus_Darmor_BZH_scaffold_149p00180 Brassica napus HOM05D000588 ORTHO05D000637 6.6e-08 62.0 96 41.7
C01p52520 Brassica napus HOM05D000588 ORTHO05D000637 6.6e-08 62.0 96 41.7
C05p55290 Brassica napus HOM05D000588 ORTHO05D000637 6.6e-08 62.0 106 39.6
BolC1t05190H Brassica oleracea HOM05D000588 ORTHO05D000637 6.6e-08 62.0 96 41.7
BraA01t04118Z Brassica rapa HOM05D000588 ORTHO05D000637 6.6e-08 62.0 96 41.7
BraA05t22485Z Brassica rapa HOM05D000588 ORTHO05D000637 6.6e-08 62.0 106 39.6
Lj5g0024116 Lotus japonicus HOM05D000588 ORTHO05D000637 6.6e-08 62.0 73 43.8
Nitab4.5_0000555g0090 Nicotiana tabacum HOM05D000588 ORTHO05D000637 6.6e-08 62.0 111 38.7
Sabra18G0000300 Salix brachista HOM05D000588 ORTHO05D000637 6.6e-08 62.0 86 43.0
Sabra18G0010700 Salix brachista HOM05D000588 ORTHO05D000637 6.6e-08 62.0 86 43.0
PGSC0003DMG400009537 Solanum tuberosum HOM05D000588 ORTHO05D000637 6.6e-08 62.0 81 43.2
Gohir.A06G141933 Gossypium hirsutum HOM05D000588 ORTHO05D000637 8.6e-08 61.6 132 36.4
PGSC0003DMG400026273 Solanum tuberosum HOM05D000588 ORTHO05D000637 8.6e-08 61.6 91 37.4
AL3G24330 Arabidopsis lyrata HOM05D000588 ORTHO05D000637 1.1e-07 61.2 114 36.8
COL.COLO4_30898 Corchorus olitorius HOM05D000588 ORTHO05D000637 1.1e-07 61.2 106 38.7
Duzib160G0862 Durio zibethinus HOM05D000588 ORTHO05D000637 1.1e-07 61.2 85 40.0
Nitab4.5_0007342g0040 Nicotiana tabacum HOM05D000588 ORTHO05D000637 1.1e-07 61.2 88 38.6
Psat6g032280 Pisum sativum HOM05D000588 ORTHO05D000637 1.1e-07 61.2 80 42.5
Rhsim08G0201200 Rhododendron simsii HOM05D000588 ORTHO05D000637 1.1e-07 61.2 79 45.6
Sopen08g002270 Solanum pennellii HOM05D000588 ORTHO05D000637 1.1e-07 61.2 85 41.2
Dinv23259 Davidia involucrata HOM05D000669 ORTHO05D000679 1.5e-07 60.8 79 43.0
BolC5t34194H Brassica oleracea HOM05D000588 ORTHO05D000637 1.9e-07 60.5 106 38.7
Atru.chr1.2835 Acer truncatum HOM05D000588 ORTHO05D000637 2.5e-07 60.1 110 36.4
Glyma.14G133200 Glycine max HOM05D000588 ORTHO05D000637 2.5e-07 60.1 89 40.4
Sp3g10800 Schrenkiella parvula HOM05D000588 ORTHO05D000637 3.3e-07 59.7 86 41.9
Sopen08g002760 Solanum pennellii HOM05D000588 ORTHO05D000637 3.3e-07 59.7 83 39.8
PGSC0003DMG400009531 Solanum tuberosum HOM05D000588 ORTHO05D000637 3.3e-07 59.7 107 37.4
AT3G12660 Arabidopsis thaliana HOM05D000588 ORTHO05D000637 4.3e-07 59.3 104 35.6
Manes.11G071100 Manihot esculenta HOM05D000588 ORTHO05D000637 4.3e-07 59.3 108 40.7
Medtr1g009950 Medicago truncatula HOM05D000588 ORTHO05D000637 4.3e-07 59.3 82 41.5
Sed0017398 Sechium edule HOM05D000588 ORTHO05D000637 4.3e-07 59.3 107 41.1
Solyc08g006810.1 Solanum lycopersicum HOM05D000588 ORTHO05D000637 4.3e-07 59.3 79 40.5
Actinidia18269 Actinidia chinensis HOM05D000588 ORTHO05D000637 5.6e-07 58.9 94 39.4
Glyma.17G202000 Glycine max HOM05D000588 ORTHO05D000637 5.6e-07 58.9 89 40.4
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 7.3e-07 58.5 75 44.0
CAN.G137.59 Capsicum annuum HOM05D000588 ORTHO05D000637 7.3e-07 58.5 92 39.1
Lalb_Chr14g0362211 Lupinus albus HOM05D000588 ORTHO05D000637 7.3e-07 58.5 84 39.3
Potri.006G276200 Populus trichocarpa HOM05D000588 ORTHO05D000637 7.3e-07 58.5 73 42.5
Sed0024999 Sechium edule HOM05D000588 ORTHO05D000637 7.3e-07 58.5 81 45.7
Zm00001eb236720 Zea mays HOM05D000588 ORTHO05D000637 9.5e-07 58.2 100 41.0
Gorai.010G169900 Gossypium raimondii HOM05D000588 ORTHO05D000637 1.2e-06 57.8 110 36.4
VMungo0647G0671 Vigna mungo HOM05D000588 ORTHO05D000637 1.2e-06 57.8 88 38.6
CAN.G353.22 Capsicum annuum HOM05D000588 ORTHO05D000637 1.6e-06 57.4 84 39.3
Nitab4.5_0007342g0010 Nicotiana tabacum HOM05D000588 ORTHO05D000637 1.6e-06 57.4 113 32.7
EL10Ac2g03724 Beta vulgaris HOM05D000588 ORTHO05D000637 2.1e-06 57.0 114 31.6
SalBow1G6051 Salvia bowleyana HOM05D000588 ORTHO05D000637 2.1e-06 57.0 124 37.1
Sed0019487 Sechium edule HOM05D000588 ORTHO05D000637 2.1e-06 57.0 78 44.9
Eucgr.J03138 Eucalyptus grandis HOM05D000588 ORTHO05D000637 2.8e-06 56.6 78 43.6
Aa31LG8G20 Aethionema arabicum HOM05D000588 ORTHO05D000637 3.6e-06 56.2 67 44.8
Oeu033452.3 Olea europaea HOM05D000588 ORTHO05D000637 3.6e-06 56.2 68 42.6
Sc23g0004320 Simmondsia chinensis HOM05D000588 ORTHO05D000637 3.6e-06 56.2 132 31.8
MSTRG.25798 Avicennia marina HOM05D000588 ORTHO05D000637 4.7e-06 55.8 93 39.8
BcaB06g25526 Brassica carinata HOM05D000588 ORTHO05D000637 4.7e-06 55.8 78 42.3
Peaxi162Scf00045g02010 Petunia axillaris HOM05D000588 ORTHO05D000637 4.7e-06 55.8 103 33.0
Lj3P180T17 Lonicera japonica HOM05D000588 ORTHO05D000637 6.1e-06 55.5 94 39.4
Sp3g10810 Schrenkiella parvula HOM05D000588 ORTHO05D000637 6.1e-06 55.5 98 34.7
vmacro19085 Vaccinium macrocarpon HOM05D000588 ORTHO05D000637 6.1e-06 55.5 102 37.3
Atru.chr7.2623 Acer truncatum HOM05D000588 ORTHO05D000637 8.0e-06 55.1 91 37.4
CDE05G2710 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 8.0e-06 55.1 69 44.9
Lj3P187T15 Lonicera japonica HOM05D000588 ORTHO05D000637 8.0e-06 55.1 94 39.4
MBI16_g25210_MAGBIO Magnolia biondii HOM05D000588 ORTHO05D000637 8.0e-06 55.1 136 34.6
Thecc.09G005600 Theobroma cacao HOM05D000588 ORTHO05D000637 8.0e-06 55.1 70 45.7
HPP92_010466 Vanilla planifolia HOM05D000809 ORTHO05D001196 8.0e-06 55.1 88 40.9


User provided reference genes

Program Settings