Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2123 Fragaria x ananassa HOM05D000870 ORTHO05D045599 3.7e-51 204.5 100 100.0
FAN10G3981 Fragaria x ananassa HOM05D000870 ORTHO05D000715 5.4e-18 94.4 87 58.6
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 9.3e-18 93.6 98 55.1
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 9.3e-18 93.6 98 55.1
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 9.3e-18 93.6 98 55.1
FvH4_7g12270 Fragaria vesca HOM05D000870 ORTHO05D045599 1.6e-17 92.8 57 80.7
Duzib114G0076 Durio zibethinus HOM05D000870 ORTHO05D000715 3.0e-16 88.6 98 51.0
MD01G1120600 Malus domestica HOM05D000870 ORTHO05D000715 3.0e-16 88.6 98 52.0
Gohir.D05G299500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 6.7e-16 87.4 98 51.0
Gorai.009G317000 Gossypium raimondii HOM05D000870 ORTHO05D000715 6.7e-16 87.4 98 51.0
Duzib128G0225 Durio zibethinus HOM05D000870 ORTHO05D000715 8.7e-16 87.0 98 50.0
Gohir.D10G219700 Gossypium hirsutum HOM05D000870 ORTHO05D000715 8.7e-16 87.0 98 50.0
Gorai.011G246400 Gossypium raimondii HOM05D000870 ORTHO05D000715 8.7e-16 87.0 98 50.0
Duzib106G1966 Durio zibethinus HOM05D000870 ORTHO05D000715 1.1e-15 86.7 98 51.0
COL.COLO4_10920 Corchorus olitorius HOM05D000870 ORTHO05D000715 1.5e-15 86.3 98 51.0
Oeu025628.1 Olea europaea HOM05D000870 ORTHO05D000715 1.9e-15 85.9 98 49.0
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 2.5e-15 85.5 98 51.0
Gohir.A05G299700 Gossypium hirsutum HOM05D000870 ORTHO05D000715 3.3e-15 85.1 98 50.0
Gohir.A10G211500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 3.3e-15 85.1 98 50.0
Ciclev10031759m.g Citrus clementina HOM05D000870 ORTHO05D000715 7.4e-15 84.0 98 49.0
MD07G1190000 Malus domestica HOM05D000870 ORTHO05D000715 7.4e-15 84.0 98 50.0
Oeu023556.2 Olea europaea HOM05D000870 ORTHO05D000715 1.6e-14 82.8 98 46.9
RhsimUnG0096600 Rhododendron simsii HOM05D000870 ORTHO05D000715 2.1e-14 82.4 91 49.5
TPR.G15509 Trifolium pratense HOM05D000870 ORTHO05D000715 2.1e-14 82.4 98 46.9
TAR633G0149 Trochodendron aralioides HOM05D000870 ORTHO05D000715 2.1e-14 82.4 98 45.9
Cpa.g.sc1.332 Carica papaya HOM05D000870 ORTHO05D000715 2.8e-14 82.0 98 49.0
Dinv31409 Davidia involucrata HOM05D000870 ORTHO05D000715 3.7e-14 81.6 98 46.9
Glyma.18G286100 Glycine max HOM05D000870 ORTHO05D000715 4.8e-14 81.3 98 46.9
Prupe.2G227500 Prunus persica HOM05D000870 ORTHO05D000715 4.8e-14 81.3 94 50.0
Thecc.10G057800 Theobroma cacao HOM05D000870 ORTHO05D000715 4.8e-14 81.3 98 48.0
A04p30450 Brassica napus HOM05D000870 ORTHO05D000715 6.2e-14 80.9 98 46.9
BraA04t18463Z Brassica rapa HOM05D000870 ORTHO05D000715 6.2e-14 80.9 98 46.9
Eucgr.J01168 Eucalyptus grandis HOM05D000870 ORTHO05D000715 6.2e-14 80.9 80 53.8
BcaC02g12075 Brassica carinata HOM05D000870 ORTHO05D000715 8.1e-14 80.5 98 46.9
A05p06940 Brassica napus HOM05D000870 ORTHO05D000715 8.1e-14 80.5 98 46.9
BolC4t22430H Brassica oleracea HOM05D000870 ORTHO05D000715 8.1e-14 80.5 98 46.9
Medtr7g022890 Medicago truncatula HOM05D000870 ORTHO05D000715 8.1e-14 80.5 98 44.9
PGR142G3727 Punica granatum HOM05D000870 ORTHO05D000715 8.1e-14 80.5 98 48.0
vmacro07142 Vaccinium macrocarpon HOM05D000870 ORTHO05D000715 1.1e-13 80.1 98 44.9
VMungo1383G0651 Vigna mungo HOM05D000870 ORTHO05D000715 1.4e-13 79.7 98 45.9
AL4G36840 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 1.8e-13 79.3 98 45.9
Nn2g10502 Nelumbo nucifera HOM05D000870 ORTHO05D000715 1.8e-13 79.3 80 51.2
Potri.010G211300 Populus trichocarpa HOM05D000870 ORTHO05D000715 1.8e-13 79.3 98 44.9
BcaC02g07403 Brassica carinata HOM05D000870 ORTHO05D000715 2.4e-13 79.0 98 45.9
BcaB06g29087 Brassica carinata HOM05D000870 ORTHO05D000715 3.1e-13 78.6 98 45.9
C04p67350 Brassica napus HOM05D000870 ORTHO05D000715 3.1e-13 78.6 98 45.9
BolC4t28230H Brassica oleracea HOM05D000870 ORTHO05D000715 3.1e-13 78.6 98 45.9
Phvul.008G015500 Phaseolus vulgaris HOM05D000870 ORTHO05D000715 3.1e-13 78.6 98 44.9
THA.LOC104824256 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 3.1e-13 78.6 98 44.9
BcaB02g09118 Brassica carinata HOM05D000870 ORTHO05D000715 4.0e-13 78.2 98 45.9
Atru.chr12.562 Acer truncatum HOM05D000870 ORTHO05D000715 5.3e-13 77.8 98 44.9
AT2G39450 Arabidopsis thaliana HOM05D000870 ORTHO05D000715 5.3e-13 77.8 98 45.9
Ca_07178_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 5.3e-13 77.8 98 44.9
Thhalv10016762m.g Eutrema salsugineum HOM05D000870 ORTHO05D000715 5.3e-13 77.8 98 44.9
Manes.10G037600 Manihot esculenta HOM05D000870 ORTHO05D000715 5.3e-13 77.8 79 54.4
AL463U10030 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 6.9e-13 77.4 98 44.9
CANSAT54G0016 Cannabis sativa HOM05D000870 ORTHO05D000715 6.9e-13 77.4 80 55.0
Carub.0004s0709 Capsella rubella HOM05D000870 ORTHO05D000715 6.9e-13 77.4 83 49.4
Carub.0004s2152 Capsella rubella HOM05D000870 ORTHO05D000715 6.9e-13 77.4 98 44.9
CARHR134320 Cardamine hirsuta HOM05D000870 ORTHO05D000715 6.9e-13 77.4 98 44.9
DCAR_015229 Daucus carota HOM05D000870 ORTHO05D000715 6.9e-13 77.4 98 45.9
Glyma.02G095400 Glycine max HOM05D000870 ORTHO05D000715 6.9e-13 77.4 98 43.9
Lsat_1_v5_gn_9_66501 Lactuca sativa HOM05D000870 ORTHO05D000715 6.9e-13 77.4 98 44.9
Sed0008473 Sechium edule HOM05D000870 ORTHO05D000715 6.9e-13 77.4 98 46.9
TAR636G0054 Trochodendron aralioides HOM05D000870 ORTHO05D000715 6.9e-13 77.4 80 53.8
Hma1.2p1_0402F.1_g145051 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 9.0e-13 77.0 98 44.9
Hma1.2p1_1483F.1_g286260 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 9.0e-13 77.0 98 44.9
Lj1g0016343 Lotus japonicus HOM05D000870 ORTHO05D000715 9.0e-13 77.0 98 43.9
ECA232G3794 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.2e-12 76.6 98 44.9
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 1.2e-12 76.6 98 43.9
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.2e-12 76.6 98 43.9
Psat3g185840 Pisum sativum HOM05D000870 ORTHO05D000715 1.2e-12 76.6 98 44.9
Psat6g190320 Pisum sativum HOM05D000870 ORTHO05D000715 1.2e-12 76.6 98 43.9
Actinidia34344 Actinidia chinensis HOM05D000870 ORTHO05D000715 1.5e-12 76.3 98 43.9
Aqoxy4G03049 Aquilegia oxysepala HOM05D000870 ORTHO05D000715 1.5e-12 76.3 98 43.9
TWI15G0914 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 1.5e-12 76.3 98 44.9
GSVIVG01016640001 Vitis vinifera HOM05D000870 ORTHO05D000715 1.5e-12 76.3 98 43.9
Actinidia02982 Actinidia chinensis HOM05D000870 ORTHO05D000715 2.0e-12 75.9 79 50.6
Aa31LG5G20150 Aethionema arabicum HOM05D000870 ORTHO05D000715 2.0e-12 75.9 98 43.9
CiPaw.01G281900 Carya illinoinensis HOM05D000870 ORTHO05D000715 2.6e-12 75.5 98 43.9
Dinv25960 Davidia involucrata HOM05D000870 ORTHO05D000715 2.6e-12 75.5 80 48.8
Lalb_Chr04g0257941 Lupinus albus HOM05D000870 ORTHO05D000715 2.6e-12 75.5 98 42.9
TWI63G1221 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 2.6e-12 75.5 98 44.9
EL10Ac2g03459 Beta vulgaris HOM05D000870 ORTHO05D000715 3.4e-12 75.1 98 42.9
HanXRQChr09g0247671 Helianthus annuus HOM05D000870 ORTHO05D000715 4.5e-12 74.7 98 43.9
Potri.008G049600 Populus trichocarpa HOM05D000870 ORTHO05D000715 4.5e-12 74.7 80 48.8
HPP92_026993 Vanilla planifolia HOM05D000870 ORTHO05D000715 4.5e-12 74.7 98 45.9
arahy.Tifrunner.gnm1.ann1.F3QZDX Arachis hypogaea HOM05D000870 ORTHO05D000715 5.8e-12 74.3 98 41.8
arahy.Tifrunner.gnm1.ann1.HJ8JHV Arachis hypogaea HOM05D000870 ORTHO05D000715 5.8e-12 74.3 98 41.8
arahy.Tifrunner.gnm1.ann1.J9LUB0 Arachis hypogaea HOM05D000870 ORTHO05D000715 5.8e-12 74.3 98 41.8
Zm00001eb148620 Zea mays HOM05D000870 ORTHO05D000715 5.8e-12 74.3 98 41.8
arahy.Tifrunner.gnm1.ann1.C1W7MD Arachis hypogaea HOM05D000870 ORTHO05D000715 7.6e-12 73.9 79 48.1
AUR62022527 Chenopodium quinoa HOM05D000870 ORTHO05D000715 7.6e-12 73.9 96 42.7
Nitab4.5_0000914g0320 Nicotiana tabacum HOM05D000870 ORTHO05D000715 7.6e-12 73.9 87 44.8
Nitab4.5_0006851g0030 Nicotiana tabacum HOM05D000870 ORTHO05D000715 7.6e-12 73.9 87 44.8
Os01g0837800 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 7.6e-12 73.9 98 43.9
Sc09g0007170 Simmondsia chinensis HOM05D000870 ORTHO05D000715 1.0e-11 73.6 98 41.8
Haze_16994 Corylus avellana HOM05D000870 ORTHO05D000715 1.3e-11 73.2 79 49.4
MBI05_g07851_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 1.3e-11 73.2 101 41.6
Peaxi162Scf00015g02216 Petunia axillaris HOM05D000870 ORTHO05D000715 1.3e-11 73.2 98 43.9
HPP92_015404 Vanilla planifolia HOM05D000870 ORTHO05D000715 1.3e-11 73.2 98 44.9
CSS0018656 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 1.7e-11 72.8 79 49.4
Sed0027298 Sechium edule HOM05D000870 ORTHO05D000715 1.7e-11 72.8 98 43.9
Hund20002 Selenicereus undatus HOM05D000870 ORTHO05D000715 1.7e-11 72.8 98 41.8
PGSC0003DMG400023516 Solanum tuberosum HOM05D000870 ORTHO05D000715 1.7e-11 72.8 98 43.9
CDE09G0752 Ceratophyllum demersum HOM05D000870 ORTHO05D000715 2.2e-11 72.4 98 41.8
Eucgr.G02893 Eucalyptus grandis HOM05D000870 ORTHO05D000715 2.2e-11 72.4 98 42.9
Lsat_1_v5_gn_8_17280 Lactuca sativa HOM05D000870 ORTHO05D000715 2.2e-11 72.4 98 42.9
CAN.G1339.7 Capsicum annuum HOM05D000870 ORTHO05D000715 3.8e-11 71.6 98 42.9
AUR62035956 Chenopodium quinoa HOM05D000870 ORTHO05D000715 3.8e-11 71.6 96 41.7
SHI22537 Sapria himalayana HOM05D000870 ORTHO05D000715 3.8e-11 71.6 81 48.1
PSO206G0056 Papaver somniferum HOM05D000870 ORTHO05D000715 4.9e-11 71.2 80 50.0
PSO339G2412 Papaver somniferum HOM05D000870 ORTHO05D000715 4.9e-11 71.2 80 50.0
Solyc05g054730.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 4.9e-11 71.2 98 41.8
Sopen05g033200 Solanum pennellii HOM05D000870 ORTHO05D000715 4.9e-11 71.2 98 41.8
Nn2g12876 Nelumbo nucifera HOM05D000870 ORTHO05D000715 6.5e-11 70.9 94 43.6
CSS0026766 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 8.4e-11 70.5 98 43.9
CiPaw.02G180100 Carya illinoinensis HOM05D000870 ORTHO05D000715 8.4e-11 70.5 80 47.5
MELO3C023828.2 Cucumis melo HOM05D000870 ORTHO05D000715 8.4e-11 70.5 84 48.8
C04p08200 Brassica napus HOM05D000870 ORTHO05D000715 1.1e-10 70.1 75 52.0
C04p08260 Brassica napus HOM05D000870 ORTHO05D000715 1.1e-10 70.1 75 52.0
CsaV3_5G006700 Cucumis sativus L. HOM05D000870 ORTHO05D000715 1.4e-10 69.7 79 49.4
Cfa001540 Carpinus fangiana HOM05D000870 ORTHO05D000715 1.9e-10 69.3 79 48.1
Cc02_g08480 Coffea canephora HOM05D000870 ORTHO05D000715 1.9e-10 69.3 81 48.1
ATR0751G193 Amborella trichopoda HOM05D000870 ORTHO05D000715 5.5e-10 67.8 81 43.2
THA.LOC104799375 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 5.1e-08 61.2 98 39.8
Hma1.2p1_0207F.1_g087730 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 1.5e-07 59.7 82 43.9
QL08p057959 Quercus lobata HOM05D000870 ORTHO05D000715 3.3e-07 58.5 38 71.1
Ah.16g107570 Amaranthus hybridus HOM05D000870 ORTHO05D000715 1.6e-06 56.2 82 40.2
HanXRQChr13g0408871 Helianthus annuus HOM05D000870 ORTHO05D000715 1.6e-06 56.2 75 40.0
Mapoly0075s0080 Marchantia polymorpha HOM05D000870 ORTHO05D000715 1.6e-06 56.2 98 36.7
HPP92_019816 Vanilla planifolia HOM05D000870 ORTHO05D000715 2.8e-06 55.5 79 39.2


User provided reference genes

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