Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.7e-208 728.4 358 100.0
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.0e-188 661.4 337 97.0
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.2e-177 625.2 337 94.1
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 2.2e-170 602.4 292 100.0
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 1.2e-163 580.1 292 96.6
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.1e-157 559.3 278 97.5
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 2.6e-155 552.4 292 91.4
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 1.6e-152 543.1 292 90.4
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 6.0e-152 541.2 291 90.4
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 1.9e-150 536.2 289 88.9
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 3.3e-150 535.4 292 88.7
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 3.3e-150 535.4 292 88.4
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 5.6e-150 534.6 292 87.3
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 9.6e-150 533.9 292 87.3
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 2.1e-149 532.7 290 86.6
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 2.1e-149 532.7 292 86.6
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 2.1e-149 532.7 292 87.7
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 2.1e-149 532.7 292 88.0
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.7e-149 531.9 292 87.3
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 3.7e-149 531.9 292 87.3
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 1.1e-148 530.4 287 87.8
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.1e-148 530.4 292 87.0
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 1.1e-148 530.4 292 86.0
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 1.8e-148 529.6 292 87.0
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.4e-148 529.3 292 86.6
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 2.4e-148 529.3 290 86.6
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 4.0e-148 528.5 292 87.0
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 5.3e-148 528.1 292 87.7
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 1.2e-147 526.9 292 86.3
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 1.2e-147 526.9 292 85.6
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.5e-147 526.6 292 86.3
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 2.0e-147 526.2 287 86.1
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 2.0e-147 526.2 287 87.1
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 4.5e-147 525.0 287 86.8
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 5.8e-147 524.6 287 85.7
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 5.8e-147 524.6 292 87.0
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 7.6e-147 524.2 292 85.3
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 1.3e-146 523.5 290 87.6
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.7e-146 523.1 292 85.3
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 8.4e-146 520.8 287 85.4
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 1.4e-145 520.0 287 84.0
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.9e-145 519.6 292 84.6
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 1.9e-145 519.6 294 84.7
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 2.5e-145 519.2 292 84.6
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 3.2e-145 518.8 292 84.2
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 3.2e-145 518.8 287 84.7
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 4.2e-145 518.5 292 84.9
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 5.5e-145 518.1 289 86.2
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 9.3e-145 517.3 292 84.2
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 1.6e-144 516.5 274 91.2
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 2.1e-144 516.2 292 84.6
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 2.1e-144 516.2 321 79.4
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 2.1e-144 516.2 292 83.9
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 2.7e-144 515.8 292 84.2
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 7.9e-144 514.2 290 85.5
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 1.8e-143 513.1 292 82.5
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 3.0e-143 512.3 290 83.1
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 3.9e-143 511.9 287 85.0
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 3.9e-143 511.9 287 85.0
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 3.9e-143 511.9 292 82.2
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 3.9e-143 511.9 292 82.2
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 5.1e-143 511.5 292 82.2
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 5.1e-143 511.5 286 85.3
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 6.7e-143 511.1 290 84.5
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 1.9e-142 509.6 280 85.4
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 3.3e-142 508.8 292 81.5
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 4.3e-142 508.4 292 81.5
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 5.7e-142 508.1 290 82.4
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 7.4e-142 507.7 292 81.2
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 7.4e-142 507.7 292 81.5
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 7.4e-142 507.7 292 82.5
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 9.7e-142 507.3 289 82.7
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 9.7e-142 507.3 290 83.4
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 3.7e-141 505.4 292 82.5
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 3.7e-141 505.4 290 81.7
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 3.7e-141 505.4 292 82.9
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 4.8e-141 505.0 289 83.7
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 1.1e-140 503.8 292 80.8
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 1.4e-140 503.4 292 81.2
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 1.4e-140 503.4 292 81.8
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 3.1e-140 502.3 292 80.8
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 5.3e-140 501.5 292 80.8
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 1.2e-139 500.4 290 81.4
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.5e-139 500.0 293 81.2
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 3.4e-139 498.8 290 80.3
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.5e-139 498.4 287 84.0
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 5.9e-139 498.0 292 81.5
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 5.9e-139 498.0 292 81.5
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 2.9e-138 495.7 273 88.6
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 3.8e-138 495.4 292 82.2
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 3.2e-137 492.3 292 78.8
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 3.2e-137 492.3 292 78.8
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 2.1e-136 489.6 291 78.4
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.8e-135 486.5 292 77.7
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.8e-135 486.5 292 77.7
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 3.9e-135 485.3 272 85.7
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 6.7e-135 484.6 287 78.4
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 4.3e-134 481.9 291 78.7
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 7.4e-134 481.1 289 80.6
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 3.7e-133 478.8 290 78.3
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 2.4e-132 476.1 292 80.1
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 4.1e-132 475.3 294 76.5
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 4.1e-132 475.3 289 76.8
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 9.1e-132 474.2 288 79.9
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 1.5e-131 473.4 313 76.0
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 1.1e-129 467.2 251 86.9
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 1.6e-128 463.4 272 81.2
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 1.6e-128 463.4 292 78.1
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 3.7e-125 452.2 292 76.7
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 1.0e-122 444.1 309 69.9
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 6.5e-122 441.4 289 70.2
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 2.3e-119 433.0 290 69.0
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 7.4e-118 427.9 281 69.0
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 2.4e-116 422.9 271 75.6
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 4.2e-113 412.1 273 69.6
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 9.4e-113 411.0 267 70.4
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 2.8e-109 399.4 283 64.7
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.3e-101 374.0 223 78.9
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 2.5e-97 359.8 321 60.4
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 8.0e-88 328.2 183 86.3
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 2.0e-86 323.6 190 81.1
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 2.9e-85 319.7 186 82.3
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 1.1e-84 317.8 285 53.0
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 3.0e-82 309.7 294 53.4
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 5.0e-82 308.9 173 85.5
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 1.1e-79 301.2 297 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 3.2e-76 289.7 188 71.8
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 4.3e-73 279.3 297 46.1
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 6.2e-64 248.8 224 62.1
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.6e-62 243.4 224 61.2
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.0e-58 231.5 312 43.6
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 2.5e-57 226.9 164 70.1
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.5e-51 206.5 101 99.0
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.6e-51 206.1 102 97.1
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.6e-48 196.4 97 97.9
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 5.3e-47 192.6 106 82.1
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 3.1e-31 140.2 76 86.8
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.3e-29 134.8 166 48.2
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.5e-28 130.6 97 73.2
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 2.3e-10 70.9 40 87.5
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 3.7e-08 63.5 51 56.9


User provided reference genes

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