Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.9e-70 268.1 142 100.0
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 9.4e-40 167.2 93 98.9
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.6e-39 166.4 93 97.8
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.7e-38 161.0 93 95.7
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.0e-37 159.5 93 94.6
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.7e-36 156.4 93 92.5
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 6.1e-31 137.9 93 81.7
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.1e-27 127.1 94 72.3
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 7.0e-27 124.4 93 75.3
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.6e-26 123.2 94 73.4
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.8e-22 109.8 93 67.7
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 2.3e-22 109.4 93 65.6
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.3e-22 109.4 94 64.9
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 2.3e-22 109.4 94 67.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 3.0e-22 109.0 93 66.7
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 6.8e-22 107.8 92 65.2
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 2.6e-21 105.9 91 67.0
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 7.5e-21 104.4 93 64.5
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 2.2e-20 102.8 93 64.5
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 3.7e-20 102.1 92 66.3
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 6.3e-20 101.3 92 62.0
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.1e-19 100.5 93 62.4
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.1e-19 100.5 91 63.7
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.1e-19 100.5 94 64.9
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 1.4e-19 100.1 90 64.4
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 2.4e-19 99.4 92 62.0
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 2.4e-19 99.4 99 61.6
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 3.1e-19 99.0 94 60.6
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.1e-19 98.6 94 62.8
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 7.0e-19 97.8 92 59.8
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 9.1e-19 97.4 95 64.2
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 9.1e-19 97.4 93 60.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.0e-18 96.3 102 55.9
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.0e-18 96.3 92 62.0
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 2.0e-18 96.3 93 60.2
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 3.5e-18 95.5 100 56.0
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 5.9e-18 94.7 92 57.6
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.7e-18 94.4 92 62.0
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.0e-17 94.0 94 59.6
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.0e-17 94.0 92 59.8
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.0e-17 94.0 92 59.8
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.0e-17 94.0 92 59.8
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.3e-17 93.6 93 58.1
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.9e-17 92.4 94 61.7
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 6.5e-17 91.3 92 56.5
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 8.6e-17 90.9 94 59.6
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 8.6e-17 90.9 104 54.8
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 1.5e-16 90.1 94 55.3
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 1.5e-16 90.1 109 53.2
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.5e-16 89.4 93 59.1
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.5e-16 89.4 93 59.1
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.5e-16 89.4 93 59.1
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 2.5e-16 89.4 93 59.1
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 4.2e-16 88.6 90 58.9
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 5.5e-16 88.2 92 58.7
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 5.5e-16 88.2 98 61.2
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 9.5e-16 87.4 90 60.0
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 9.5e-16 87.4 95 56.8
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 3.6e-15 85.5 93 59.1
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 4.7e-15 85.1 90 56.7
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.0e-14 84.0 93 59.1
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.4e-14 83.6 94 54.3
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.4e-14 83.6 96 56.2
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.8e-14 83.2 83 55.4
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 2.3e-14 82.8 102 51.0
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 3.0e-14 82.4 96 56.2
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 3.0e-14 82.4 77 63.6
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 6.8e-14 81.3 91 53.8
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.6e-13 79.3 92 53.3
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 3.4e-13 79.0 92 55.4
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 3.4e-13 79.0 93 55.9
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 4.4e-13 78.6 93 54.8
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 5.7e-13 78.2 95 55.8
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 2.2e-12 76.3 88 52.3
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 2.2e-12 76.3 88 52.3
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 2.2e-12 76.3 90 51.1
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 2.8e-12 75.9 93 54.8
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 6.3e-12 74.7 94 50.0
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 6.3e-12 74.7 93 50.5
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 8.3e-12 74.3 98 50.0
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 8.3e-12 74.3 92 54.3
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.1e-11 73.9 94 52.1
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.8e-11 73.2 92 54.3
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.4e-11 72.8 76 57.9
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 2.4e-11 72.8 81 58.0
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 3.1e-11 72.4 94 51.1
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 3.1e-11 72.4 92 50.0
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 3.1e-11 72.4 96 50.0
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 5.4e-11 71.6 94 47.9
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 5.4e-11 71.6 94 47.9
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 5.4e-11 71.6 92 48.9
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.2e-10 70.5 96 54.2
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.2e-10 70.5 95 50.5
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 1.2e-10 70.5 94 52.1
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.0e-10 69.7 93 48.4
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 2.7e-10 69.3 88 51.1
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 2.7e-10 69.3 90 48.9
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 2.7e-10 69.3 88 53.4
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 3.5e-10 68.9 92 48.9
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 4.5e-10 68.6 86 51.2
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 5.9e-10 68.2 87 49.4
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 5.9e-10 68.2 83 51.8
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 5.9e-10 68.2 94 51.1
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 7.8e-10 67.8 90 48.9
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.0e-09 67.4 94 47.9
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.0e-09 67.4 91 46.2
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.3e-09 67.0 94 51.1
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.3e-09 67.0 90 46.7
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 1.7e-09 66.6 90 47.8
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 3.3e-08 62.4 92 47.8
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 5.6e-08 61.6 46 65.2
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.6e-07 60.1 56 55.4
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 4.7e-07 58.5 93 45.2
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.8e-06 56.6 81 43.2
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 6.8e-06 54.7 94 37.2
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 6.8e-06 54.7 52 51.9
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 8.9e-06 54.3 89 43.8


User provided reference genes

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