Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.5e-57 226.1 122 100.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.3e-57 224.9 122 99.2
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 4.3e-57 224.6 122 98.4
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.8e-56 221.9 122 98.4
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.4e-52 208.8 122 91.0
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 5.4e-52 207.6 125 92.0
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 2.7e-51 205.3 117 90.6
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 2.5e-49 198.7 122 86.1
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 2.5e-49 198.7 117 88.9
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 3.3e-49 198.4 117 88.9
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.3e-49 198.0 113 91.2
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 5.6e-49 197.6 113 91.2
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 9.5e-49 196.8 115 88.7
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 9.5e-49 196.8 113 90.3
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.2e-48 196.4 114 88.6
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 2.8e-48 195.3 118 87.3
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.8e-48 195.3 113 88.5
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 2.8e-48 195.3 115 88.7
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 2.8e-48 195.3 115 88.7
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 2.8e-48 195.3 113 90.3
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 3.6e-48 194.9 116 87.9
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 3.6e-48 194.9 113 90.3
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.7e-48 194.5 113 91.2
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.7e-48 194.5 115 87.0
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 6.2e-48 194.1 114 88.6
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 6.2e-48 194.1 114 88.6
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 6.2e-48 194.1 114 88.6
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 6.2e-48 194.1 122 82.0
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 6.2e-48 194.1 122 82.0
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 6.2e-48 194.1 122 82.0
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 6.2e-48 194.1 114 87.7
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 8.0e-48 193.7 114 88.6
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 8.0e-48 193.7 116 87.1
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 8.0e-48 193.7 116 87.1
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 8.0e-48 193.7 116 87.1
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.1e-47 193.4 115 86.1
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 1.1e-47 193.4 122 82.8
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.1e-47 193.4 113 91.2
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.1e-47 193.4 113 88.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.4e-47 193.0 114 87.7
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 90.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 90.3
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 90.3
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.4e-47 193.0 114 87.7
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 2.3e-47 192.2 113 86.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.3e-47 192.2 113 87.6
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 88.5
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 88.5
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.1e-47 191.8 115 86.1
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 3.1e-47 191.8 116 86.2
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 89.4
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.1e-47 191.8 114 87.7
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 4.0e-47 191.4 114 87.7
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 4.0e-47 191.4 114 87.7
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.0e-47 191.4 115 87.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 4.0e-47 191.4 113 89.4
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 4.0e-47 191.4 112 88.4
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 5.2e-47 191.0 113 89.4
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 5.2e-47 191.0 113 89.4
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 5.2e-47 191.0 114 87.7
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 5.2e-47 191.0 113 88.5
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 5.2e-47 191.0 121 83.5
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 6.8e-47 190.7 113 88.5
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 6.8e-47 190.7 113 88.5
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 6.8e-47 190.7 113 88.5
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 6.8e-47 190.7 116 86.2
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.8e-47 190.7 115 86.1
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.8e-47 190.7 115 86.1
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.8e-47 190.7 115 86.1
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 8.9e-47 190.3 113 88.5
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 8.9e-47 190.3 113 88.5
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 8.9e-47 190.3 113 86.7
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 87.6
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 88.5
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 87.6
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 88.5
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.2e-46 189.9 114 86.8
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 87.6
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.5e-46 189.5 116 84.5
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.5e-46 189.5 117 82.9
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 87.6
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 2.0e-46 189.1 116 86.2
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 2.0e-46 189.1 117 82.9
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.0e-46 189.1 113 86.7
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.6e-46 188.7 114 87.7
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 87.6
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 87.6
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 86.7
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.6e-46 188.7 114 86.0
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 3.4e-46 188.3 116 85.3
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 3.4e-46 188.3 114 85.1
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 4.4e-46 188.0 115 85.2
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 5.8e-46 187.6 113 85.0
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 5.8e-46 187.6 113 85.0
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 5.8e-46 187.6 114 86.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 7.5e-46 187.2 114 84.2
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 9.8e-46 186.8 113 85.8
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 9.8e-46 186.8 114 85.1
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.3e-45 186.4 113 85.8
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.7e-45 186.0 115 85.2
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 1.7e-45 186.0 115 83.5
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.7e-45 186.0 113 86.7
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.2e-45 185.7 115 81.7
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 2.9e-45 185.3 118 83.1
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 2.9e-45 185.3 115 85.2
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.3e-45 183.7 115 80.9
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.1e-44 183.3 113 84.1
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.1e-44 183.3 113 83.2
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.1e-44 183.3 116 81.0
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.1e-44 183.3 116 81.0
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.4e-44 183.0 116 81.9
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 1.4e-44 183.0 111 84.7
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.9e-44 182.6 110 85.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.9e-44 182.6 123 81.3
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.4e-44 182.2 113 84.1
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.4e-44 182.2 115 80.0
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 4.1e-44 181.4 125 78.4
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 9.2e-44 180.3 105 88.6
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 9.2e-44 180.3 111 83.8
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.2e-43 179.9 115 81.7
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.7e-43 178.7 107 86.0
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 7.8e-43 177.2 114 80.7
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 7.8e-43 177.2 109 82.6
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.0e-42 176.8 113 81.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.7e-42 176.0 113 81.4
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.9e-42 174.9 151 66.2
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 8.6e-42 173.7 109 83.5
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 4.3e-41 171.4 116 75.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.1e-40 169.1 114 74.6
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-38 163.3 175 56.6
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.9e-36 156.0 89 86.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.4e-36 155.6 108 73.1
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.4e-36 155.6 119 73.9
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-35 153.3 197 50.3
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 3.5e-35 151.8 88 86.4
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 6.2e-32 141.0 85 84.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.8e-31 139.4 79 97.5
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.4e-31 139.0 99 73.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 3.1e-31 138.7 81 86.4
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 5.2e-31 137.9 88 78.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 5.2e-31 137.9 72 93.1
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 8.9e-31 137.1 85 84.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.2e-30 136.7 81 88.9
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.6e-30 135.6 86 82.6
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.3e-29 133.3 67 97.0
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 2.9e-29 132.1 85 80.0
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 5.4e-28 127.9 82 79.3
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 7.1e-28 127.5 102 68.6
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 7.1e-28 127.5 102 68.6
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 1.5e-25 119.8 109 58.7
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 2.5e-25 119.0 97 56.7
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.4e-23 112.5 70 84.3
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 9.0e-23 110.5 83 73.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.0e-22 109.4 72 80.6
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 5.8e-22 107.8 80 75.0
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.7e-18 96.3 107 58.9
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.3e-18 95.9 79 64.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 4.8e-16 88.2 61 73.8
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 8.1e-16 87.4 67 77.6
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.8e-15 86.3 50 96.0
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.1e-07 60.5 48 68.8
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.5e-06 56.6 47 68.1
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 4.5e-06 55.1 41 73.2
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 4.5e-06 55.1 41 73.2


User provided reference genes

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