Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.2e-52 208.8 112 100.0
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-41 172.9 92 98.9
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-41 172.9 92 98.9
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.5e-40 169.5 92 97.8
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 4.3e-40 167.9 88 100.0
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 5.0e-36 154.5 88 90.9
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 2.4e-30 135.6 88 77.3
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 2.6e-29 132.1 88 77.3
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 2.1e-26 122.5 88 72.7
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 6.1e-26 120.9 88 70.5
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 1.8e-25 119.4 88 68.2
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 2.0e-24 115.9 89 68.5
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 2.6e-24 115.5 88 67.0
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 5.7e-24 114.4 88 63.6
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 5.7e-24 114.4 88 65.9
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 9.7e-24 113.6 88 62.5
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 1.3e-23 113.2 88 62.5
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 2.2e-23 112.5 91 65.9
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 8.2e-23 110.5 88 61.4
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.8e-22 109.4 80 65.0
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 3.1e-22 108.6 88 61.4
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 4.1e-22 108.2 90 58.9
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 5.3e-22 107.8 87 65.5
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 2.6e-21 105.5 88 62.5
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 5.9e-21 104.4 80 63.8
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.0e-20 103.6 92 56.5
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.7e-20 102.8 54 98.1
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.7e-20 102.8 54 98.1
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 3.8e-20 101.7 77 62.3
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 3.8e-20 101.7 87 57.5
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 5.0e-20 101.3 92 57.6
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 8.5e-20 100.5 73 67.1
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 8.5e-20 100.5 92 55.4
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 1.9e-19 99.4 74 68.9
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 4.2e-19 98.2 82 62.2
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 4.2e-19 98.2 89 61.8
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 5.5e-19 97.8 88 58.0
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 5.5e-19 97.8 80 65.0
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 7.2e-19 97.4 85 61.2
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 9.4e-19 97.1 91 57.1
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 9.4e-19 97.1 82 59.8
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 9.4e-19 97.1 90 56.7
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 9.4e-19 97.1 105 51.4
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 1.2e-18 96.7 88 58.0
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 1.6e-18 96.3 88 55.7
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.6e-18 96.3 79 62.0
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.1e-18 95.9 86 57.0
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 2.1e-18 95.9 88 59.1
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 2.1e-18 95.9 88 58.0
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 2.7e-18 95.5 85 52.9
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 3.6e-18 95.1 89 57.3
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 3.6e-18 95.1 89 57.3
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 4.7e-18 94.7 88 56.8
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 4.7e-18 94.7 88 53.4
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 6.1e-18 94.4 80 57.5
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 1.0e-17 93.6 88 56.8
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.0e-17 93.6 80 57.5
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.0e-17 93.6 77 55.8
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.4e-17 93.2 90 56.7
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 2.3e-17 92.4 92 55.4
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 2.3e-17 92.4 92 55.4
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 2.3e-17 92.4 82 58.5
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 4.0e-17 91.7 80 53.8
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 5.2e-17 91.3 80 56.2
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 6.7e-17 90.9 88 53.4
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 6.7e-17 90.9 87 50.6
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 8.8e-17 90.5 81 59.3
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 8.8e-17 90.5 86 50.0
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 1.2e-16 90.1 91 54.9
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 1.5e-16 89.7 92 54.3
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 1.5e-16 89.7 86 55.8
FvH4_5g31640 Fragaria vesca HOM05D006609 ORTHO05D046171 2.0e-16 89.4 54 87.0
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 2.0e-16 89.4 74 62.2
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 2.6e-16 89.0 83 55.4
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 4.4e-16 88.2 92 54.3
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 4.4e-16 88.2 88 53.4
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 4.4e-16 88.2 88 53.4
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 4.4e-16 88.2 76 59.2
FAN18G4502 Fragaria x ananassa HOM05D006609 ORTHO05D046171 5.7e-16 87.8 70 70.0
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 5.7e-16 87.8 91 49.5
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 7.5e-16 87.4 77 53.2
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 2.8e-15 85.5 88 52.3
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 3.7e-15 85.1 83 49.4
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 3.7e-15 85.1 77 55.8
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 4.8e-15 84.7 77 59.7
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 4.8e-15 84.7 77 59.7
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 4.8e-15 84.7 77 59.7
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 8.2e-15 84.0 79 51.9
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 1.1e-14 83.6 80 51.2
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.8e-14 82.8 76 53.9
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.8e-14 82.8 87 55.2
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 3.1e-14 82.0 77 57.1
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 1.6e-13 79.7 79 57.0
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 2.0e-13 79.3 94 51.1
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 3.5e-13 78.6 87 51.7
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 4.5e-13 78.2 87 46.0
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 5.9e-13 77.8 88 50.0
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 1.3e-12 76.6 88 48.9
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 8.5e-12 73.9 79 53.2
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.6e-10 69.7 67 56.7
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 3.6e-10 68.6 72 47.2
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 1.0e-09 67.0 76 47.4
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.0e-09 65.1 91 45.1
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 4.4e-08 61.6 85 43.5
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 5.7e-08 61.2 80 40.0
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 7.5e-08 60.8 65 49.2
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 3.7e-07 58.5 73 42.5


User provided reference genes

Program Settings