Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1919 Fragaria x ananassa HOM05D026066 ORTHO05D035587 4.0e-251 870.9 429 100.0
FAN24G2505 Fragaria x ananassa HOM05D026066 ORTHO05D035587 2.8e-244 848.2 423 99.1
FvH4_2g07510 Fragaria vesca HOM05D026066 ORTHO05D035587 1.1e-243 846.3 423 98.3
FvH4_6g02420 Fragaria vesca HOM05D026066 ORTHO05D196957 1.0e-44 185.3 362 35.1
MD04G1020500 Malus domestica HOM05D000007 ORTHO05D000521 1.7e-15 88.2 321 24.6
Prupe.1G170000 Prunus persica HOM05D000007 ORTHO05D000521 1.7e-15 88.2 324 27.2
FAN27G2322 Fragaria x ananassa HOM05D000007 ORTHO05D035779 6.4e-15 86.3 321 27.1
QL08p017442 Quercus lobata HOM05D000007 ORTHO05D000017 8.6e-12 75.9 268 25.7
Medtr2g047892 Medicago truncatula HOM05D000007 ORTHO05D000017 4.3e-11 73.6 227 28.2
arahy.Tifrunner.gnm1.ann1.PR6200 Arachis hypogaea HOM05D000007 ORTHO05D000017 5.6e-11 73.2 310 25.5
MD04G1021100 Malus domestica HOM05D000007 ORTHO05D000521 5.6e-11 73.2 257 26.5
arahy.Tifrunner.gnm1.ann1.N9LGBL Arachis hypogaea HOM05D000007 ORTHO05D000017 9.5e-11 72.4 310 25.2
Atru.chr4.1517 Acer truncatum HOM05D000007 ORTHO05D000017 1.6e-10 71.6 255 27.1
FAN19G0854 Fragaria x ananassa HOM05D000007 ORTHO05D005026 1.6e-10 71.6 330 25.5
Rhsim04G0042200 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.6e-10 71.6 314 25.2
FAN23G0826 Fragaria x ananassa HOM05D000007 ORTHO05D005026 2.1e-10 71.2 330 25.2
Prupe.1G170100 Prunus persica HOM05D000007 ORTHO05D000521 2.1e-10 71.2 340 24.1
Aqoxy5G03361 Aquilegia oxysepala HOM05D000007 ORTHO05D000676 2.8e-10 70.9 260 26.5
HanXRQChr08g0216011 Helianthus annuus HOM05D000007 ORTHO05D000017 2.8e-10 70.9 285 24.6
Potri.001G318400 Populus trichocarpa HOM05D000007 ORTHO05D000017 6.2e-10 69.7 275 22.2
CAN.G411.76 Capsicum annuum HOM05D000007 ORTHO05D000039 8.1e-10 69.3 210 27.6
CiPaw.15G116700 Carya illinoinensis HOM05D000007 ORTHO05D000039 8.1e-10 69.3 336 23.2
Peaxi162Scf00152g00825 Petunia axillaris HOM05D000007 ORTHO05D000039 1.8e-09 68.2 291 25.8
arahy.Tifrunner.gnm1.ann1.L3WLEE Arachis hypogaea HOM05D000007 ORTHO05D000017 3.1e-09 67.4 221 25.8
Medtr3g010590 Medicago truncatula HOM05D000007 ORTHO05D000017 3.1e-09 67.4 282 23.4
PSO675G4172 Papaver somniferum HOM05D000007 ORTHO05D000676 3.1e-09 67.4 243 25.9
Thecc.04G270600 Theobroma cacao HOM05D000007 ORTHO05D000017 3.1e-09 67.4 277 26.0
FvH4_1g04511 Fragaria vesca HOM05D000007 ORTHO05D005026 4.0e-09 67.0 288 25.3
BolC3t14489H Brassica oleracea HOM05D000171 ORTHO05D000101 5.2e-09 66.6 246 28.9
Medtr3g030240 Medicago truncatula HOM05D000007 ORTHO05D000017 5.2e-09 66.6 284 22.9
PSO135G0762 Papaver somniferum HOM05D000007 ORTHO05D000676 5.2e-09 66.6 286 23.4
HanXRQChr07g0185881 Helianthus annuus HOM05D000007 ORTHO05D000017 6.8e-09 66.2 268 26.9
Lj2g0007827 Lotus japonicus HOM05D000007 ORTHO05D000017 6.8e-09 66.2 300 25.0
Ah.15g097560 Amaranthus hybridus HOM05D000007 ORTHO05D000039 1.2e-08 65.5 269 24.2
arahy.Tifrunner.gnm1.ann1.0HK6QF Arachis hypogaea HOM05D000007 ORTHO05D000017 1.2e-08 65.5 214 25.7
Lj3A538T48 Lonicera japonica HOM05D000007 ORTHO05D000017 1.5e-08 65.1 228 25.9
Prupe.1G169800 Prunus persica HOM05D000007 ORTHO05D000521 1.5e-08 65.1 144 32.6
HanXRQChr09g0257081 Helianthus annuus HOM05D000007 ORTHO05D000017 2.6e-08 64.3 301 24.3
RcHm_v2.0_Chr4g0412831 Rosa chinensis HOM05D000007 ORTHO05D000521 2.6e-08 64.3 145 30.3
Cc10_g11870 Coffea canephora HOM05D000007 ORTHO05D000521 3.4e-08 63.9 248 26.6
arahy.Tifrunner.gnm1.ann1.S3Q5J6 Arachis hypogaea HOM05D000007 ORTHO05D000017 4.4e-08 63.5 225 24.4
Peaxi162Scf00469g00073 Petunia axillaris HOM05D000007 ORTHO05D000039 4.4e-08 63.5 247 23.1
RcHm_v2.0_Chr2g0154671 Rosa chinensis HOM05D000007 ORTHO05D000017 4.4e-08 63.5 294 24.8
PSO782G0120 Papaver somniferum HOM05D000007 ORTHO05D000676 5.8e-08 63.2 271 20.7
arahy.Tifrunner.gnm1.ann1.7PDR7X Arachis hypogaea HOM05D000007 ORTHO05D000017 7.5e-08 62.8 224 26.8
BcaC01g05920 Brassica carinata HOM05D000171 ORTHO05D000101 7.5e-08 62.8 248 27.4
C03p21070 Brassica napus HOM05D000171 ORTHO05D000101 7.5e-08 62.8 245 28.2
Medtr3g464470 Medicago truncatula HOM05D000007 ORTHO05D000017 7.5e-08 62.8 259 22.8
Medtr3g464500 Medicago truncatula HOM05D000007 ORTHO05D000017 7.5e-08 62.8 252 23.4
MD02G1290700 Malus domestica HOM05D000007 ORTHO05D000017 9.8e-08 62.4 296 22.3
AL3G17110 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 1.3e-07 62.0 204 29.9
arahy.Tifrunner.gnm1.ann1.GL2JS2 Arachis hypogaea HOM05D000007 ORTHO05D000017 1.3e-07 62.0 216 25.5
FAN28G0694 Fragaria x ananassa HOM05D000007 ORTHO05D005026 1.3e-07 62.0 286 24.1
vmacro00488 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.3e-07 62.0 279 26.2
arahy.Tifrunner.gnm1.ann1.VMDZ8Z Arachis hypogaea HOM05D000007 ORTHO05D000017 1.7e-07 61.6 221 25.8
AUR62031045 Chenopodium quinoa HOM05D000007 ORTHO05D000039 1.7e-07 61.6 281 22.8
arahy.Tifrunner.gnm1.ann1.JCQ2WP Arachis hypogaea HOM05D000007 ORTHO05D000017 2.2e-07 61.2 223 23.3
Gohir.A06G008600 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.2e-07 61.2 359 22.6
Hma1.2p1_0657F.1_g197080 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 2.2e-07 61.2 217 24.0
PSO478G4250 Papaver somniferum HOM05D000007 ORTHO05D000676 2.9e-07 60.8 167 31.1
Lj5g0011900 Lotus japonicus HOM05D000007 ORTHO05D000017 3.7e-07 60.5 335 25.1
arahy.Tifrunner.gnm1.ann1.NIV6PW Arachis hypogaea HOM05D000007 ORTHO05D000017 4.9e-07 60.1 227 23.8
AUR62028685 Chenopodium quinoa HOM05D000007 ORTHO05D000017 4.9e-07 60.1 238 23.9
arahy.Tifrunner.gnm1.ann1.D6FMYT Arachis hypogaea HOM05D000007 ORTHO05D000017 6.4e-07 59.7 222 24.8
Atru.chr1.119 Acer truncatum HOM05D000007 ORTHO05D000017 8.3e-07 59.3 293 25.6
arahy.Tifrunner.gnm1.ann1.D1G4W2 Arachis hypogaea HOM05D000007 ORTHO05D000017 8.3e-07 59.3 225 24.9
COL.COLO4_15974 Corchorus olitorius HOM05D000007 ORTHO05D000521 8.3e-07 59.3 264 23.1
FAN21G3512 Fragaria x ananassa HOM05D000007 ORTHO05D000521 8.3e-07 59.3 226 28.3
Lj1C663T4 Lonicera japonica HOM05D000007 ORTHO05D000039 8.3e-07 59.3 249 24.5
Dinv24460 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-06 58.9 289 23.9
AL6G42950 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.4e-06 58.5 262 24.4
Medtr4g129190 Medicago truncatula HOM05D000007 ORTHO05D000017 1.4e-06 58.5 221 26.7
arahy.Tifrunner.gnm1.ann1.8KF55G Arachis hypogaea HOM05D000007 ORTHO05D000017 1.9e-06 58.2 227 23.8
PSO210G2562 Papaver somniferum HOM05D000007 ORTHO05D000676 1.9e-06 58.2 147 29.9
Lj1C663T3 Lonicera japonica HOM05D000007 ORTHO05D000039 2.4e-06 57.8 330 24.5
MD02G1290800 Malus domestica HOM05D000007 ORTHO05D000017 2.4e-06 57.8 298 23.8
Thhalv10009523m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.2e-06 57.4 243 25.9
Medtr7g055977 Medicago truncatula HOM05D000007 ORTHO05D000017 3.2e-06 57.4 224 26.8
Haze_02856 Corylus avellana HOM05D000007 ORTHO05D000039 4.1e-06 57.0 145 32.4
Atru.chr1.120 Acer truncatum HOM05D000007 ORTHO05D000017 5.4e-06 56.6 268 23.5
Cfa007611 Carpinus fangiana HOM05D000007 ORTHO05D000039 7.1e-06 56.2 284 20.4
Medtr0128s0010 Medicago truncatula HOM05D000007 ORTHO05D000017 7.1e-06 56.2 130 30.0
PSO832G0873 Papaver somniferum HOM05D000007 ORTHO05D000676 9.2e-06 55.8 284 24.6


User provided reference genes

Program Settings