Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 2.1e-55 219.2 143 100.0
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 2.1e-55 219.2 143 100.0
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 4.4e-45 184.9 140 86.4
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 1.7e-41 172.9 139 86.3
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 5.2e-30 134.8 145 67.6
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 2.0e-29 132.9 142 65.5
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 4.4e-29 131.7 135 65.2
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 3.7e-28 128.6 135 64.4
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.1e-27 127.1 133 65.4
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 1.1e-27 127.1 138 68.1
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 2.4e-27 125.9 146 63.7
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 5.4e-27 124.8 138 68.1
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 1.6e-26 123.2 138 67.4
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.6e-26 123.2 133 63.2
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 2.0e-26 122.9 138 68.1
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 2.7e-26 122.5 136 64.7
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 2.7e-26 122.5 140 60.0
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 6.0e-26 121.3 136 66.9
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 8.6e-25 117.5 135 67.4
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 2.5e-24 115.9 141 63.8
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 3.3e-24 115.5 135 62.2
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 5.6e-24 114.8 142 63.4
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 5.6e-24 114.8 135 62.2
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 1.2e-23 113.6 140 65.7
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 1.2e-23 113.6 137 67.9
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 1.6e-23 113.2 137 66.4
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 1.6e-23 113.2 140 64.3
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 2.1e-23 112.8 136 61.0
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 2.1e-23 112.8 140 58.6
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 6.2e-23 111.3 135 60.0
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 6.2e-23 111.3 134 65.7
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 6.2e-23 111.3 137 67.2
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 3.1e-22 109.0 141 60.3
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 3.1e-22 109.0 141 62.4
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 5.2e-22 108.2 136 60.3
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 8.9e-22 107.5 141 64.5
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 2.0e-21 106.3 135 59.3
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 4.4e-21 105.1 143 60.1
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 7.5e-21 104.4 135 55.6
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 1.3e-20 103.6 141 58.9
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 1.7e-20 103.2 136 62.5
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 1.7e-20 103.2 141 56.0
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 2.9e-20 102.4 140 60.0
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 2.9e-20 102.4 139 61.2
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 4.9e-20 101.7 134 64.9
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 6.4e-20 101.3 135 62.2
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 8.3e-20 100.9 140 57.9
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 8.3e-20 100.9 142 57.7
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 1.4e-19 100.1 136 61.8
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 1.4e-19 100.1 145 58.6
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 2.4e-19 99.4 138 60.9
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 3.2e-19 99.0 133 61.7
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 3.2e-19 99.0 138 64.5
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 5.4e-19 98.2 144 56.9
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 5.4e-19 98.2 144 56.9
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 9.2e-19 97.4 143 57.3
MD05G1000400 Malus domestica HOM05D007581 ORTHO05D009250 1.6e-18 96.7 107 70.1
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 4.6e-18 95.1 145 55.2
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 6.0e-18 94.7 135 57.0
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 7.8e-18 94.4 136 59.6
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 7.8e-18 94.4 136 59.6
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 3.0e-17 92.4 135 56.3
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 3.9e-17 92.0 139 58.3
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 6.6e-17 91.3 146 54.8
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 8.6e-17 90.9 135 57.0
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 1.1e-16 90.5 145 53.8
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 2.5e-16 89.4 137 59.9
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 1.6e-15 86.7 141 57.4
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 3.6e-15 85.5 168 50.6
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 6.2e-15 84.7 124 56.5
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 8.1e-15 84.3 145 51.7
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 1.4e-14 83.6 145 53.8
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 1.4e-14 83.6 145 53.8
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 1.8e-14 83.2 96 65.6
PSO761G0508 Papaver somniferum HOM05D007581 ORTHO05D009250 1.8e-14 83.2 91 74.7
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 2.3e-14 82.8 135 55.6
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 2.3e-14 82.8 135 55.6
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 3.1e-14 82.4 136 56.6
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 4.0e-14 82.0 134 57.5
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 6.8e-14 81.3 129 46.5
VMungo0464G1076 Vigna mungo HOM05D007581 ORTHO05D009250 2.0e-13 79.7 119 58.8
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 2.6e-13 79.3 144 54.2
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 4.4e-13 78.6 167 49.7
MD02G1202800 Malus domestica HOM05D007581 ORTHO05D009250 4.4e-13 78.6 108 54.6
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 7.5e-13 77.8 138 55.8
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 2.9e-12 75.9 141 48.9
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 8.3e-12 74.3 136 51.5
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 1.9e-11 73.2 92 67.4
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 5.4e-11 71.6 133 54.1
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 1.6e-10 70.1 134 53.7
TWI75G0477 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 7.8e-10 67.8 93 67.7
HanXRQChr04g0102981 Helianthus annuus HOM05D007581 ORTHO05D009250 1.0e-09 67.4 97 64.9
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 3.9e-09 65.5 97 58.8
MD11G1234100 Malus domestica HOM05D007581 ORTHO05D009250 3.3e-08 62.4 60 56.7
Cfa008025 Carpinus fangiana HOM05D007581 ORTHO05D009250 1.8e-06 56.6 33 78.8
QL09p000872 Quercus lobata HOM05D007581 ORTHO05D009250 1.8e-06 56.6 91 65.9
PGR102G1605 Punica granatum HOM05D007581 ORTHO05D009250 3.1e-06 55.8 99 63.6
Mapoly0034s0024 Marchantia polymorpha HOM05D020710 ORTHO05D009250 4.0e-06 55.5 136 47.1


User provided reference genes

Program Settings