Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 9.7e-115 416.8 203 100.0
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 1.7e-111 406.0 203 97.0
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 1.5e-78 296.6 199 76.4
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.2e-77 291.2 149 94.0
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.1e-76 290.4 147 95.2
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.4e-75 285.4 149 94.0
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 3.8e-42 175.6 154 61.7
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 3.2e-41 172.6 154 65.6
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 2.1e-37 159.8 154 57.8
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 1.7e-34 150.2 151 55.0
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 2.2e-34 149.8 151 52.3
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 1.1e-33 147.5 145 53.8
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 1.5e-30 137.1 152 52.0
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 2.5e-30 136.3 152 51.3
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 2.8e-29 132.9 170 45.3
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 6.3e-29 131.7 152 48.0
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 1.1e-28 131.0 147 46.9
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 4.5e-27 125.6 148 48.0
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 5.9e-27 125.2 147 46.3
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.0e-26 124.4 146 50.7
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.9e-26 122.9 146 45.2
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.9e-26 122.9 148 48.6
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 2.9e-26 122.9 151 47.7
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 6.5e-26 121.7 148 47.3
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 8.4e-26 121.3 146 44.5
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.1e-25 120.9 146 47.9
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 3.2e-25 119.4 146 48.6
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 3.2e-25 119.4 157 45.9
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 3.2e-25 119.4 154 46.8
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 4.2e-25 119.0 108 54.6
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.2e-24 117.5 145 46.9
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 1.6e-24 117.1 145 44.1
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 2.7e-24 116.3 142 46.5
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 3.5e-24 115.9 155 45.2
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 3.0e-23 112.8 152 42.1
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 3.9e-23 112.5 158 43.7
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 3.9e-23 112.5 145 48.3
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 6.7e-23 111.7 153 44.4
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 8.7e-23 111.3 145 44.1
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 1.1e-22 110.9 108 51.9
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 3.3e-22 109.4 122 48.4
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 7.4e-22 108.2 156 44.2
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 1.6e-21 107.1 147 42.9
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 6.3e-21 105.1 134 44.8
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 6.3e-21 105.1 148 42.6
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 1.1e-20 104.4 151 43.0
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 3.1e-20 102.8 141 44.0
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 5.3e-20 102.1 151 41.1
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.5e-19 100.5 150 44.7
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 1.5e-19 100.5 150 39.3
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 4.5e-19 99.0 161 38.5
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 1.0e-18 97.8 160 41.2
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.0e-18 97.8 151 43.7
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 3.8e-18 95.9 158 38.0
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.4e-17 94.0 138 44.9
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 9.4e-17 91.3 146 39.0
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 9.4e-17 91.3 147 41.5
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.2e-16 90.9 120 43.3
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 1.6e-16 90.5 163 40.5
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 2.1e-16 90.1 146 40.4
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 2.7e-16 89.7 167 41.3
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 3.6e-16 89.4 104 52.9
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 6.1e-16 88.6 145 40.7
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 1.0e-15 87.8 150 38.7
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.4e-15 87.4 162 36.4
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 2.3e-15 86.7 153 42.5
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 2.3e-15 86.7 128 42.2
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.3e-15 86.7 116 45.7
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 2.3e-15 86.7 152 38.2
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 3.9e-15 85.9 158 37.3
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 5.1e-15 85.5 163 38.0
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 1.5e-14 84.0 147 38.8
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.5e-14 84.0 147 38.8
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 2.0e-14 83.6 148 37.2
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 2.5e-14 83.2 153 41.2
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 3.3e-14 82.8 163 34.4
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.3e-14 82.4 158 40.5
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 5.7e-14 82.0 146 37.7
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 5.7e-14 82.0 185 35.7
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 9.7e-14 81.3 96 47.9
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 2.2e-13 80.1 146 37.0
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 6.3e-13 78.6 163 38.0
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.1e-12 77.8 61 59.0
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 1.1e-12 77.8 138 36.2
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.4e-12 77.4 147 37.4
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.4e-12 77.4 147 37.4
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.4e-12 77.4 147 37.4
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 1.4e-12 77.4 62 61.3
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 3.1e-12 76.3 150 36.7
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 1.5e-11 73.9 64 57.8
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 5.9e-11 72.0 67 55.2
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 5.9e-11 72.0 111 37.8
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 1.0e-10 71.2 155 35.5
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 1.3e-10 70.9 171 32.2
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.3e-10 70.9 162 34.0
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 5.0e-10 68.9 133 34.6
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 8.5e-10 68.2 120 35.8
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 8.5e-10 68.2 119 36.1
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 3.2e-09 66.2 72 45.8
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 3.2e-09 66.2 44 68.2
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 4.7e-08 62.4 98 34.7
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 1.4e-07 60.8 77 37.7
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.1e-06 57.8 41 56.1


User provided reference genes

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