Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 9.2e-104 380.2 186 100.0
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.1e-95 352.4 186 94.1
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 9.3e-88 327.0 221 77.4
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 8.2e-76 287.3 207 74.9
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 4.5e-66 255.0 203 64.0
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 5.9e-66 254.6 203 64.0
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.1e-63 246.1 204 64.2
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 2.7e-63 245.7 203 63.1
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 3.6e-63 245.4 265 52.8
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 6.3e-60 234.6 208 61.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.5e-58 229.9 201 59.7
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 7.7e-58 227.6 204 60.8
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 3.8e-57 225.3 199 62.3
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 2.5e-56 222.6 194 60.8
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 4.2e-56 221.9 206 57.8
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 2.7e-55 219.2 206 57.3
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 2.7e-55 219.2 198 57.1
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.7e-55 219.2 205 58.5
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 2.7e-55 219.2 202 60.9
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 3.6e-55 218.8 203 57.1
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 6.1e-55 218.0 193 60.6
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 6.1e-55 218.0 193 60.6
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 7.9e-55 217.6 201 58.7
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 1.8e-54 216.5 132 86.4
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.8e-54 216.5 194 60.8
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.3e-54 216.1 199 58.8
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 2.3e-54 216.1 203 56.7
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 3.9e-54 215.3 212 55.2
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 3.9e-54 215.3 199 58.3
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 5.1e-54 214.9 208 57.7
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 5.1e-54 214.9 194 57.2
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 6.7e-54 214.5 198 58.6
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 6.7e-54 214.5 201 58.7
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 8.8e-54 214.2 216 54.2
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.1e-53 213.8 205 57.1
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 1.1e-53 213.8 200 59.0
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.5e-53 213.4 202 58.4
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.0e-53 213.0 204 56.4
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 2.0e-53 213.0 205 56.1
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 2.0e-53 213.0 197 59.9
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.3e-53 212.2 200 58.0
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 3.3e-53 212.2 200 58.0
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 3.3e-53 212.2 134 78.4
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 5.7e-53 211.5 197 57.9
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 5.7e-53 211.5 199 57.3
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 7.4e-53 211.1 192 56.8
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 1.7e-52 209.9 194 56.7
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.8e-52 209.1 199 57.8
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.8e-52 209.1 204 56.4
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 4.8e-52 208.4 201 55.2
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 6.3e-52 208.0 211 56.9
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 8.2e-52 207.6 204 54.4
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 8.2e-52 207.6 200 56.0
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 2.4e-51 206.1 207 56.0
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 4.1e-51 205.3 207 55.6
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 9.1e-51 204.1 202 56.9
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 9.1e-51 204.1 253 49.0
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.2e-50 203.8 206 56.3
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 2.0e-50 203.0 200 55.0
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 4.5e-50 201.8 209 53.1
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.0e-49 200.7 204 54.4
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.7e-49 199.9 207 55.1
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.0e-49 198.4 194 55.7
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.0e-49 198.4 237 47.7
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 5.0e-49 198.4 200 55.0
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.4e-48 196.8 237 47.7
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 9.4e-48 194.1 200 54.5
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.2e-47 193.7 200 55.0
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.6e-47 193.4 195 54.4
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.6e-47 193.4 209 52.2
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.1e-47 193.0 206 52.9
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 2.1e-47 193.0 201 53.2
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.0e-47 191.0 192 55.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 1.8e-46 189.9 211 51.7
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 3.0e-46 189.1 193 53.9
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 5.2e-46 188.3 209 52.2
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.1e-45 187.2 152 65.1
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 1.5e-45 186.8 203 53.2
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.5e-45 186.8 205 51.7
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.3e-45 185.7 203 50.7
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 7.4e-45 184.5 133 67.7
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 8.2e-44 181.0 191 51.3
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 1.1e-43 180.6 182 54.9
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 1.1e-43 180.6 132 67.4
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.4e-43 180.3 132 66.7
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.4e-43 179.5 200 51.5
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 9.1e-43 177.6 191 50.3
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.6e-42 176.8 135 65.9
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.7e-41 173.3 193 51.3
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 2.9e-41 172.6 263 41.4
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 2.9e-41 172.6 132 63.6
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 2.5e-40 169.5 131 64.9
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 9.4e-40 167.5 134 59.7
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 2.1e-39 166.4 231 45.0
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.8e-38 163.3 204 46.1
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 3.0e-38 162.5 204 46.1
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.7e-37 158.3 201 47.3
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 5.3e-35 151.8 166 54.2
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.3e-33 147.1 191 44.0
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 2.2e-33 146.4 161 52.8
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.9e-32 143.3 233 38.6
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.1e-31 139.8 183 42.6
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.7e-31 139.4 127 56.7
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.4e-30 137.1 123 57.7
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 5.2e-30 135.2 267 36.0
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 4.4e-29 132.1 160 47.5
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.7e-28 130.2 164 45.7
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 2.2e-28 129.8 102 61.8
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 9.1e-27 124.4 174 44.3
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 2.0e-26 123.2 127 51.2
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.0e-25 120.9 122 46.7
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 1.3e-25 120.6 117 47.9
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 3.8e-25 119.0 163 46.0
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 5.0e-25 118.6 129 54.3
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 5.5e-24 115.2 60 78.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 9.5e-24 114.4 109 59.6
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.2e-23 114.0 146 44.5
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.8e-23 112.8 59 79.7
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 3.0e-22 109.4 110 58.2
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.5e-18 95.9 74 56.8
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.9e-17 92.4 102 44.1
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.5e-16 90.5 141 42.6
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.9e-16 90.1 100 39.0
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 4.7e-15 85.5 109 48.6
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 4.7e-15 85.5 129 41.9
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 4.0e-14 82.4 115 36.5
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.2e-13 80.9 72 61.1
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.5e-13 80.5 117 37.6
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.0e-13 80.1 112 41.1
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 4.4e-13 79.0 98 42.9
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 9.8e-13 77.8 94 42.6
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.7e-12 77.0 109 41.3
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 2.9e-12 76.3 94 47.9
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.5e-10 69.3 36 77.8
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 3.5e-10 69.3 36 77.8
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 6.0e-10 68.6 104 37.5
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 6.0e-10 68.6 49 59.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 5.6e-08 62.0 131 32.1
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 6.2e-07 58.5 120 35.8


User provided reference genes

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