Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 9.7e-87 323.6 175 100.0
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 4.8e-86 321.2 175 98.9
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 7.7e-84 313.9 175 96.6
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.2e-76 290.0 175 92.0
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 3.1e-69 265.4 180 83.3
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 1.2e-55 220.3 183 68.3
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 4.8e-54 214.9 183 66.1
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 3.1e-53 212.2 183 66.1
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 5.0e-51 204.9 183 65.0
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 3.2e-50 202.2 187 63.1
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 4.7e-49 198.4 182 64.3
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 3.4e-47 192.2 177 63.3
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 1.3e-46 190.3 184 60.3
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 2.0e-44 183.0 179 58.1
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 4.5e-44 181.8 182 59.9
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 7.7e-44 181.0 182 59.9
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 3.6e-41 172.2 180 57.8
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 4.7e-41 171.8 185 59.5
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 6.1e-41 171.4 179 58.1
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 8.0e-41 171.0 181 56.9
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 1.0e-40 170.6 182 57.7
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 1.0e-40 170.6 180 56.7
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 1.8e-40 169.9 179 56.4
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 2.3e-40 169.5 184 57.1
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 2.3e-40 169.5 182 55.5
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 3.0e-40 169.1 166 59.0
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 4.0e-40 168.7 182 56.0
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 6.8e-40 167.9 182 56.0
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 8.9e-40 167.5 182 56.6
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 2.6e-39 166.0 154 62.3
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 5.7e-39 164.9 152 60.5
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 7.5e-39 164.5 175 56.6
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 9.8e-39 164.1 180 58.3
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 1.3e-38 163.7 183 56.8
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 2.9e-38 162.5 174 55.7
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 4.9e-38 161.8 185 56.8
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 6.4e-38 161.4 175 53.1
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 6.4e-38 161.4 167 57.5
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 6.4e-38 161.4 174 55.7
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 8.3e-38 161.0 178 57.3
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 1.1e-37 160.6 175 57.7
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 1.1e-37 160.6 193 54.9
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 1.8e-37 159.8 195 52.3
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 5.4e-37 158.3 163 60.7
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 1.2e-36 157.1 168 56.5
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 1.2e-36 157.1 183 54.1
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 1.2e-36 157.1 215 50.2
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 1.6e-36 156.8 172 55.8
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 1.6e-36 156.8 179 52.0
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 2.7e-36 156.0 183 53.6
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 1.3e-35 153.7 174 55.2
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 2.3e-35 152.9 152 57.9
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 2.9e-35 152.5 172 57.0
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 2.9e-35 152.5 168 57.7
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 2.9e-35 152.5 181 53.0
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 5.0e-35 151.8 168 59.5
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 1.1e-34 150.6 186 55.9
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 1.1e-34 150.6 186 55.9
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 1.5e-34 150.2 168 57.1
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.9e-34 149.8 168 53.0
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 3.6e-33 145.6 177 53.1
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 4.7e-33 145.2 176 50.0
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 1.0e-32 144.1 181 49.2
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 1.4e-32 143.7 138 63.0
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.8e-32 143.3 182 50.5
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 2.0e-31 139.8 175 49.7
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 3.4e-31 139.0 181 50.8
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 3.4e-31 139.0 210 48.1
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 5.8e-31 138.3 116 65.5
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 7.5e-31 137.9 105 69.5
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 7.5e-31 137.9 160 51.9
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 9.8e-31 137.5 165 50.3
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 1.7e-30 136.7 123 64.2
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 3.7e-30 135.6 195 48.7
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 8.3e-30 134.4 183 53.0
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 1.4e-29 133.7 161 48.4
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 1.9e-29 133.3 137 58.4
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 2.4e-29 132.9 133 57.9
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 4.1e-29 132.1 179 45.8
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 1.6e-28 130.2 123 61.0
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 1.6e-28 130.2 106 67.9
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 2.0e-28 129.8 132 57.6
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 2.3e-27 126.3 160 53.1
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 1.2e-25 120.6 163 47.2
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 2.3e-24 116.3 131 55.7
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 3.1e-24 115.9 232 40.1
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 8.3e-22 107.8 116 53.4
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 1.1e-21 107.5 113 54.0
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 1.1e-18 97.4 135 50.4
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 5.8e-15 85.1 55 80.0
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.4e-13 80.5 150 41.3
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 5.4e-13 78.6 57 70.2
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 5.4e-13 78.6 124 41.9
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 4.7e-09 65.5 59 59.3
CBR_g11056 Chara braunii HOM05D007485 ORTHO05D009437 5.2e-08 62.0 126 34.1
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 7.6e-07 58.2 136 38.2
Ca_22684_v3 Cicer arietinum L. HOM05D007485 ORTHO05D009437 2.2e-06 56.6 53 56.6
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 3.8e-06 55.8 68 45.6


User provided reference genes

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